Label-Free MicroRNA Optical Biosensors

MicroRNAs (miRNAs) play crucial roles in regulating gene expression. Many studies show that miRNAs have been linked to almost all kinds of disease. In addition, miRNAs are well preserved in a variety of specimens, thereby making them ideal biomarkers for biosensing applications when compared to traditional protein biomarkers. Conventional biosensors for miRNA require fluorescent labeling, which is complicated, time-consuming, laborious, costly, and exhibits low sensitivity. The detection of miRNA remains a big challenge due to their intrinsic properties such as small sizes, low abundance, and high sequence similarity. A label-free biosensor can simplify the assay and enable the direct detection of miRNA. The optical approach for a label-free miRNA sensor is very promising and many assays have demonstrated ultra-sensitivity (aM) with a fast response time. Here, we review the most relevant label-free microRNA optical biosensors and the nanomaterials used to enhance the performance of the optical biosensor

Ultrasensitive Tapered Optical Fiber Refractive Index

Refractive index (RI) sensors are of great interest for label-free optical biosensing. A tapered optical fiber (TOF) RI sensor with micron-sized waist diameters can dramatically enhance sensor sensitivity by reducing the mode volume over a long distance. Here, a simple and fast method is used to fabricate highly sensitive refractive index sensors based on localized surface plasmon resonance (LSPR). Two TOFs (l = 5 mm) with waist diameters of 5 µm and 12 µm demonstrated sensitivity enhancement at λ = 1559 nm for glucose sensing (5-45 wt%) at room temperature. The optical power transmission decreased with increasing glucose concentration due to the interaction of the propagating light in the evanescent field with glucose molecules. The coating of the TOF with gold nanoparticles (AuNPs) as an active layer for glucose sensing generated LSPR through the interaction of the evanescent wave with AuNPs deposited at the tapered waist. The results indicated that the TOF (Ø = 5 µm) exhibited improved sensing performance with a sensitivity of 1265%/RIU compared to the TOF (Ø = 12 µm) at 560%/RIU towards glucose. The AuNPs were characterized using scanning electron microscopy and ultraviolent-visible spectroscopy. The AuNPs-decorated TOF (Ø = 12 µm) demonstrated a high sensitivity of 2032%/RIU toward glucose. The AuNPs-decorated TOF sensor showed a sensitivity enhancement of nearly 4 times over TOF (Ø = 12 µm) with RI ranging from 1.328 to 1.393. The fabricated TOF enabled ultrasensitive glucose detection with good stability and fast response that may lead to next-generation ultrasensitive biosensors for real-world applications, such as disease diagnosis

The production of OH in a nanosecond pulsed helium plasma jet impinging on water, saline, or pigskin

Applications of plasma-induced biological effects via reactive oxygen and nitrogen species (RONS) make the non-thermal atmospheric-pressure plasma jets an appealing tool in biomedical fields. The presence of biological materials, especially as part of the electrode circuit, may change the plasma properties and impact on the production of RONS at the plasma-biomaterial interface. Effects of biomaterials on the production of hydroxyl radicals (OH) in a nanosecond pulsed, atmospheric-pressure plasma jet were investigated using a needle-to-plate electrode configuration with water, phosphate-buffered saline (PBS), or pigskin covering the ground plate. Driven by 200 ns, 7 kV pulses at 1 kHz, a helium plasma jet was generated between the hollow needle electrode and the biomaterial. Temporally resolved UV-visible imaging showed that the use of pigskin slowed down the streamer head propagation, whereas a more pronounced surface ionization wave was developed on the surface when water was used. The highest OH(A-X) emission above the biomaterial surface was observed using the PBS-covered electrode plate comparing to water or pigskin. Spatiotemporally resolved laser-induced fluorescence (LIF) showed that more OH was produced in the region near the needle electrode for both water and PBS, and the use of pigskin resulted in least OH production overall. In addition, measurements of H2O2 production in the liquid were used to determine the OH concentration in the vicinity of the biomaterial and agreed well with the relative OH-LIF measurements obtained at the gas-liquid interface for water and PBS

(S)-Benzyl 3-(4-hy­droxy­phen­yl)-2-(trityl­amino)­propano­ate

The title compound, C35H31NO3, was obtained by the reaction of (S)-benzyl 2-amino-3-(4-hy­droxy­phen­yl)propano­ate and (chloro­methane­tri­yl)tribenzene. The enanti­omer has been assigned by reference to an unchanging chiral centre in the synthetic procedure. In the crystal, mol­ecules are linked into chains running along the a axis by inter­molecular O—H⋯O hydrogen bonds

Discussion on drawing common problems in data tracking and analysis

The tracking and analysis of geophysical network data has been fully carried out at stations and central stations. In the past five years, the effectiveness of the work has gradually become apparent. The event records generated by the tracking and analysis of earthquake precursor data demonstrate the dynamic changes in the observation data of the precursor network，which is beneficial for the persons to analyze and summarize various events, so that similar problems can be quickly solved in the next encounter. However, in the actual process of data tracking and analysis，some station personnel may have some defects in the production of maps. This article analyzes and explores common problems in selecting mapping time periods, text annotations, missing event recording maps, multi-component measurement item recording maps, earthquake event recording maps, and other common problems in the maps produced by data tracking and analysis, proposes specific methods to solve the problems, and assigns them to practice. It provides useful assistance for station personnel to complete data tracking and analysis research results, and also provides certain reference and reference for encountering other difficulties in work

Experiments using sub-wavelength diameter tapered optical fibers in Rubidium vapor

In this work, we describe experimental research on a relatively new nonlinear optics system comprised of a sub-wavelength diameter Tapered Optical Fiber (TOF) suspended in atomic Rubidium (Rb) vapor. The compression of the evanescent optical mode propagating along the TOF enables a dramatic increase in the nonlinear interactions between the fields and the surrounding Rb atoms, thereby allowing the observation of a variety of nonlinear optical effects with very low-power fields. Specifically, we report on the observation of saturated absorption with nW power levels and, more significantly, the observation of two-photon absorption using power-levels corresponding to only 10's to 100's of photons interacting with the Rb atoms at a given time. One significant drawback to this TOF in Rb system is that at the relatively high atomic densities needed for many of these experiments, Rb atoms accumulating on the TOF surface can cause a significant loss of overall transmission through the fiber. Here we report direct measurements of the time-scale associated with this transmission degradation for various Rb density conditions. We find that transmission is affected almost immediately after the introduction of Rb vapor into the system, and declines rapidly as the density is increased. More significantly, we show how a heating element designed to raise the TOF temperature can be used to reduce this transmission loss and dramatically extend the effective TOF transmission lifetime. Our results indicate that it is possible to achieve relatively high TOF transmission, even in the presence of the relatively high Rb vapor densities that would be needed for many low-power nonlinear optics applications. This study represents a significant step in moving the basic TOF in Rb system from a laboratory setting towards a practical ultra-low-power nonlinear optics device

Experiments using sub-wavelength diameter tapered optical fibers in Rubidium vapor

In this work, we describe experimental research on a relatively new nonlinear optics system comprised of a sub-wavelength diameter Tapered Optical Fiber (TOF) suspended in atomic Rubidium (Rb) vapor. The compression of the evanescent optical mode propagating along the TOF enables a dramatic increase in the nonlinear interactions between the fields and the surrounding Rb atoms, thereby allowing the observation of a variety of nonlinear optical effects with very low-power fields. Specifically, we report on the observation of saturated absorption with nW power levels and, more significantly, the observation of two-photon absorption using power-levels corresponding to only 10's to 100's of photons interacting with the Rb atoms at a given time. One significant drawback to this TOF in Rb system is that at the relatively high atomic densities needed for many of these experiments, Rb atoms accumulating on the TOF surface can cause a significant loss of overall transmission through the fiber. Here we report direct measurements of the time-scale associated with this transmission degradation for various Rb density conditions. We find that transmission is affected almost immediately after the introduction of Rb vapor into the system, and declines rapidly as the density is increased. More significantly, we show how a heating element designed to raise the TOF temperature can be used to reduce this transmission loss and dramatically extend the effective TOF transmission lifetime. Our results indicate that it is possible to achieve relatively high TOF transmission, even in the presence of the relatively high Rb vapor densities that would be needed for many low-power nonlinear optics applications. This study represents a significant step in moving the basic TOF in Rb system from a laboratory setting towards a practical ultra-low-power nonlinear optics device

Systematic Understanding of Mechanisms of a Chinese Herbal Formula in Treatment of Metabolic Syndrome by an Integrated Pharmacology Approach

Metabolic syndrome (MS) is becoming a worldwide health problem. Wendan decoction (WDD)—a famous traditional Chinese medicine formula—has been extensively employed to relieve syndromes related to MS in clinical practice in China. However, its pharmacological mechanisms still remain vague. In this study, a comprehensive approach that integrated chemomics, principal component analysis, molecular docking simulation, and network analysis was established to elucidate the multi-component and multi-target mechanism of action of WDD in treatment of MS. The compounds in WDD were found to possess chemical diversity, complexity and drug-likeness compared to MS drugs. Six nuclear receptors were obtained to have strong binding affinity with 217 compounds of five herbs in WDD. The importance roles of targets and herbs were also identified due to network parameters. Five compounds from Radix Glycyrrhizae Preparata can hit all six targets, which can assist in screening new MS drugs. The pathway network analysis demonstrated that the main pharmacological effects of WDD might lie in maintaining lipid and glucose metabolisms and anticancer activities as well as immunomodulatory and hepatoprotective effects. This study provided a comprehensive system approach for understanding the multi-component, multi-target and multi-pathway mechanisms of WDD during the treatment of MS

Multi-Layer Identification of Highly-Potent ABCA1 Up-Regulators Targeting LXRβ Using Multiple QSAR Modeling, Structural Similarity Analysis, and Molecular Docking

In this study, in silico approaches, including multiple QSAR modeling, structural similarity analysis, and molecular docking, were applied to develop QSAR classification models as a fast screening tool for identifying highly-potent ABCA1 up-regulators targeting LXRβ based on a series of new flavonoids. Initially, four modeling approaches, including linear discriminant analysis, support vector machine, radial basis function neural network, and classification and regression trees, were applied to construct different QSAR classification models. The statistics results indicated that these four kinds of QSAR models were powerful tools for screening highly potent ABCA1 up-regulators. Then, a consensus QSAR model was developed by combining the predictions from these four models. To discover new ABCA1 up-regulators at maximum accuracy, the compounds in the ZINC database that fulfilled the requirement of structural similarity of 0.7 compared to known potent ABCA1 up-regulator were subjected to the consensus QSAR model, which led to the discovery of 50 compounds. Finally, they were docked into the LXRβ binding site to understand their role in up-regulating ABCA1 expression. The excellent binding modes and docking scores of 10 hit compounds suggested they were highly-potent ABCA1 up-regulators targeting LXRβ. Overall, this study provided an effective strategy to discover highly potent ABCA1 up-regulators

Structural Investigation for Optimization of Anthranilic Acid Derivatives as Partial FXR Agonists by in Silico Approaches

In this paper, a three level in silico approach was applied to investigate some important structural and physicochemical aspects of a series of anthranilic acid derivatives (AAD) newly identified as potent partial farnesoid X receptor (FXR) agonists. Initially, both two and three-dimensional quantitative structure activity relationship (2D- and 3D-QSAR) studies were performed based on such AAD by a stepwise technology combined with multiple linear regression and comparative molecular field analysis. The obtained 2D-QSAR model gave a high predictive ability (R2train = 0.935, R2test = 0.902, Q2LOO = 0.899). It also uncovered that number of rotatable single bonds (b_rotN), relative negative partial charges (RPC−), oprea's lead-like (opr_leadlike), subdivided van der Waal’s surface area (SlogP_VSA2) and accessible surface area (ASA) were important features in defining activity. Additionally, the derived3D-QSAR model presented a higher predictive ability (R2train = 0.944, R2test = 0.892, Q2LOO = 0.802). Meanwhile, the derived contour maps from the 3D-QSAR model revealed the significant structural features (steric and electronic effects) required for improving FXR agonist activity. Finally, nine newly designed AAD with higher predicted EC50 values than the known template compound were docked into the FXR active site. The excellent molecular binding patterns of these molecules also suggested that they can be robust and potent partial FXR agonists in agreement with the QSAR results. Overall, these derived models may help to identify and design novel AAD with better FXR agonist activity