STENOSTOMUM LEUCOPS DUGÈS, 1828 (PLATYHELMINTHES, CATENULIDA): A PUTATIVE SPECIES COMPLEX WITH PHENOTYPIC PLASTICITY

RESUMO Stenostomum são pequenos vermes que vivem em água doce e normalmente se reproduzem assexualmente por paratomia. Eles estão na base da filogenia dos platelmintes. Por mais de um século, espécies desse gênero, especialmente S. leucops, vêm sendo empregadas em estudos biológicos, principalmente sobre regeneração. Entretanto, alguns aspectos básicos da biologia destes vermes são ainda pobremente conhecidos. Neste estudo, caracterizamos uma linhagem que vem sendo mantida no laboratório por cinco anos. O tempo necessário para reprodução assexuada e completa formação de zoóides, a 28°C, é de aproximadamente 42,5 horas. O número de células nos zoóides, logo após a paratomia, é de aproximadamente 2.500. O número de zoóides presentes nos vermes é uma característica variável e depende das condições de cultivo. Em alguns procedimentos de cultivo de S. leucops, apenas cadeias com dois zoóides são formadas. No entanto, em outras condições de cultivo, cadeias de até cinco zoóides podem ser observadas. Análise filogenética empregando sequência do gene de Citocromo C Oxidase (COI) mostrou que S. leucops e S. grande constituem um complexo de espécies cujas linhagens mostram altas divergências intraespecíficas.ABSTRACT Species of Stenostomum are small flatworms that live in freshwater and normally reproduce asexually by paratomy. They are basal in the phylogeny of Platyhelminthes. For more than a century, species of this genus, especially S. leucops, have been used in regeneration and other biological studies. However, some basic aspects of their biology are poorly known. Here, we characterized a strain of S. leucops that has been maintained in the laboratory for five years and a recent strain of S. grande. The time required for complete formation of zooids of S. leucops by asexual reproduction is approximately 42.5 hours at 28°C. The number of cells in the zooids, soon after paratomy, is approximately 2,500. The number of zooids formed in the chain is a plastic characteristic and is dependent on the conditions for cultivation. In some cultivation conditions of S. leucops, only worms with two zooids are formed. However, in other conditions, worms with up to five zooids are observed. Phylogenetic analyses of a fragment of the Cytochrome C Oxidase I (COI) sequence showed S. leucops and S. grande species constitute a species complex, the lineages of which having high intraspecific divergences

STENOSTOMUM LEUCOPS DUGÈS, 1828 (PLATYHELMINTHES, CATENULIDA): A PUTATIVE SPECIES COMPLEX WITH PHENOTYPIC PLASTICITY

RESUMO Stenostomum são pequenos vermes que vivem em água doce e normalmente se reproduzem assexualmente por paratomia. Eles estão na base da filogenia dos platelmintes. Por mais de um século, espécies desse gênero, especialmente S. leucops, vêm sendo empregadas em estudos biológicos, principalmente sobre regeneração. Entretanto, alguns aspectos básicos da biologia destes vermes são ainda pobremente conhecidos. Neste estudo, caracterizamos uma linhagem que vem sendo mantida no laboratório por cinco anos. O tempo necessário para reprodução assexuada e completa formação de zoóides, a 28°C, é de aproximadamente 42,5 horas. O número de células nos zoóides, logo após a paratomia, é de aproximadamente 2.500. O número de zoóides presentes nos vermes é uma característica variável e depende das condições de cultivo. Em alguns procedimentos de cultivo de S. leucops, apenas cadeias com dois zoóides são formadas. No entanto, em outras condições de cultivo, cadeias de até cinco zoóides podem ser observadas. Análise filogenética empregando sequência do gene de Citocromo C Oxidase (COI) mostrou que S. leucops e S. grande constituem um complexo de espécies cujas linhagens mostram altas divergências intraespecíficas.ABSTRACT Species of Stenostomum are small flatworms that live in freshwater and normally reproduce asexually by paratomy. They are basal in the phylogeny of Platyhelminthes. For more than a century, species of this genus, especially S. leucops, have been used in regeneration and other biological studies. However, some basic aspects of their biology are poorly known. Here, we characterized a strain of S. leucops that has been maintained in the laboratory for five years and a recent strain of S. grande. The time required for complete formation of zooids of S. leucops by asexual reproduction is approximately 42.5 hours at 28°C. The number of cells in the zooids, soon after paratomy, is approximately 2,500. The number of zooids formed in the chain is a plastic characteristic and is dependent on the conditions for cultivation. In some cultivation conditions of S. leucops, only worms with two zooids are formed. However, in other conditions, worms with up to five zooids are observed. Phylogenetic analyses of a fragment of the Cytochrome C Oxidase I (COI) sequence showed S. leucops and S. grande species constitute a species complex, the lineages of which having high intraspecific divergences

Methods for detection of horizontal transfer of transposable elements in complete genomes

Recent advances in nucleic acid sequencing technology are creating a diverse landscape for the analysis of horizontal transfer in complete genomes. Previously limited to prokaryotes, the availability of complete genomes from close eukaryotic species presents an opportunity to validate hypotheses about the patterns of evolution and mechanisms that drive horizontal transfer. Many of those methods can be transported from methods previously used in prokaryotic genomes, as the assumptions for horizontal transfer can be interpreted as the same. Some methods, however, require a complete adaptation, while others need refinements in sensitivity and specificity to deal with the huge datasets generated from next-generation sequencing technologies. Here we list the types of methods used for horizontal transfer detection, as well as theirs strengths and weakness

Transposable elements from the mesophragmatica group of Drosophila

Transposable elements (TEs) are middle repetitive DNA sequences classified into families according to their sequence similarities, such elements can playing an important role in the evolutionary process of their host genomes. There are many reports on the distribution of TEs in the fruit fly genus Drosophila, although there is relatively little information relating to the Neotropical mesophragmatica group of Drosophila, probably the most typical cluster of species occurring almost exclusively in the Andes mountains. Dot Blot and PCR analyses was used to study the distribution of some TEs (I, mariner, hobo, gypsy, Tom/17.6, micropia and P elements) within the mesophragmatica group of Drosophila. We found gypsy elements in all the mesophragmatica group species studied and mariner elements were absent only from Drosophila pavani but P element homologous sequences were present only in D. pavani and Drosophila gasici and the other TEs (I, hobo, Tom/17.6, micropia) were not found in any of the species investigated

The rearranged mitochondrial genome of Leptopilina boulardi (Hymenoptera: Figitidae), a parasitoid wasp of Drosophila

Abstract The partial mitochondrial genome sequence of Leptopilina boulardi (Hymenoptera: Figitidae) was characterized. Illumina sequencing was used yielding 35,999,679 reads, from which 102,482 were utilized in the assembly. The length of the sequenced region of this partial mitochondrial genome is 15,417 bp, consisting of 13 protein-coding, two rRNA, and 21tRNA genes (the trnaM failed to be sequenced) and a partial A+T-rich region. All protein-coding genes start with ATN codons. Eleven protein-coding genes presented TAA stop codons, whereas ND6 and COII that presented TA, and T nucleotides, respectively. The gene pattern revealed extensive rearrangements compared to the typical pattern generally observed in insects. These rearrangements involve two protein-coding and two ribosomal genes, along with the 16 tRNA genes. This gene order is different from the pattern described for Ibalia leucospoides (Ibaliidae, Cynipoidea), suggesting that this particular gene order can be variable among Cynipoidea superfamily members. A maximum likelihood phylogenetic analysis of the main groups of Apocrita was performed using amino acid sequence of 13 protein-coding genes, showing monophyly for the Cynipoidea superfamily within the Hymenoptera phylogeny

The rearranged mitochondrial genome of Leptopilina boulardi (Hymenoptera: Figitidae), a parasitoid wasp of Drosophila

Abstract The partial mitochondrial genome sequence of Leptopilina boulardi (Hymenoptera: Figitidae) was characterized. Illumina sequencing was used yielding 35,999,679 reads, from which 102,482 were utilized in the assembly. The length of the sequenced region of this partial mitochondrial genome is 15,417 bp, consisting of 13 protein-coding, two rRNA, and 21tRNA genes (the trnaM failed to be sequenced) and a partial A+T-rich region. All protein-coding genes start with ATN codons. Eleven protein-coding genes presented TAA stop codons, whereas ND6 and COII that presented TA, and T nucleotides, respectively. The gene pattern revealed extensive rearrangements compared to the typical pattern generally observed in insects. These rearrangements involve two protein-coding and two ribosomal genes, along with the 16 tRNA genes. This gene order is different from the pattern described for Ibalia leucospoides (Ibaliidae, Cynipoidea), suggesting that this particular gene order can be variable among Cynipoidea superfamily members. A maximum likelihood phylogenetic analysis of the main groups of Apocrita was performed using amino acid sequence of 13 protein-coding genes, showing monophyly for the Cynipoidea superfamily within the Hymenoptera phylogeny