Appendix A. Maximum-likelihood tree for the nuclear internal transcribed spacer (ITS) locus for all sequences used in concatenated analysis.

Maximum-likelihood tree for the nuclear internal transcribed spacer (ITS) locus for all sequences used in concatenated analysis

Appendix B. Maximum-likelihood tree for the chloroplast trnD-T locus for all sequences used in concatenated analysis.

Maximum-likelihood tree for the chloroplast trnD-T locus for all sequences used in concatenated analysis

Appendix E. Results of habitat-specialization analyses of Inga species in Madre de Dios as per the species delimitations revised based on the reciprocal illumination procedure.

Results of habitat-specialization analyses of Inga species in Madre de Dios as per the species delimitations revised based on the reciprocal illumination procedure

Appendix C. Summary of distance-decay analyses for Inga communities in Madre de Dios using log(geographic distance).

Summary of distance-decay analyses for Inga communities in Madre de Dios using log(geographic distance)

Appendix D. Results of habitat-specialization analyses of Inga species in Madre de Dios as per the original morphology-based species delimitations.

Results of habitat-specialization analyses of Inga species in Madre de Dios as per the original morphology-based species delimitations

7_Supp_Script_from_rawseq_to_trees

This zip file contains an example workflow for processing raw RADseq data to the output and summary of phylogenetic trees. See the README.txt within the zip file for more details

Appendix S2 from Range restricted old and young lineages show the southern Western Ghats to be both a museum and a cradle of diversity for woody plants

Additional details for species distribution modellin

Appendix S1 from Range restricted old and young lineages show the southern Western Ghats to be both a museum and a cradle of diversity for woody plants

Supporting Figures and Table

Contour map of the 25 ha plot in Kuala Belalong-Brunei Darussalam and location of the 70 subplots sampled in this study.

<p>Habitat types are given for each subplot: valley (green), low slope (dark blue); high slope (light blue); high gully (red); ridge top (orange).</p

Habitat classification.

<p>Habitat classification.</p