SI_Archive_S5

Complete raw read counts after HTSeq (raw_counts.csv; Format: csv) Complete normalized raw read counts after DESeq2 (normalized_counts_deseq2.csv; Format: csv

SI_Archive_S6

Full results of Orthofinder inferring orthologs between M. natalensis and D. melanogaster. (OrthoFinder_OrthologousGroups_all_results_MNAT_DMEL.txt; Format: plain text) Identified single copy orthologs (OrthoFinder) between M. natalensis and D. melanogaster. (OrthoFinder_OrthologousGroups_single_copy_MNAT_DMEL.txt; Format: plain text

SI_Archive_S10

Checking Mnat_13309 to confirm identiy as Ago3 with M. bellicosus de novo data. (1_checking_trin_mbel.txt; Format: plain text) (2_trin_ago3_vs_dmel; Format: plain text) (pfam_domains_ago3_contig.txt; Format: plain text) (protocol.txt; Format: plain text) (Trinity_contig.fa; FASTA-Format) (workflow.docx; Format: MS Word

SI_Archive_S2

All Primers used for qRT-PCR (Primers.txt; Format: plain text) Transcriptome contigs used to find primers (Contigs.fa; Format: fasta) Expression Results of the qRT-PCR (qRT-PCR.xlsx; Format: Excel-File

SI_Archive_S4

Multiple Sequence Alignment of all CO1 sequences (M. natalensis and M. bellicosus) (co1_m_bell_m_nat.aligned.fas; FASTA format) Distance Matrix (Kimura corrected) (aligned.distmat; Format: plain text

SI_Archive_S9

Masked multiple sequence alignment for tree inference. AGO1-3/Piwi/Aub set (ALICUT_ago1-3-piwi-aub.ginsi.vsm.fas; FASTA format

SI_Archive_S7

DEG lists for caste wise comparison (DEG_caste.csv; Format: csv

DellAmpio_et_al_2013: Supplementary Data

Supplementary File Archives of "Decisive Datasets in Phylogenomics: Lessons from Studies on the Phylogenetic Relationships of Primarily Wingless Insects

SI_Archive_S1

File with 13,959 expressed genes after HTSeq (mnat_only_expressed_genes.txt; Format: plain text

HKPLAriuTAAVRAAPEI-223

see Supplementary Materia