35 research outputs found
SI_Archive_S5
Complete raw read counts after HTSeq
(raw_counts.csv; Format: csv)
Complete normalized raw read counts after DESeq2
(normalized_counts_deseq2.csv; Format: csv
SI_Archive_S6
Full results of Orthofinder inferring orthologs between M. natalensis and D. melanogaster.
(OrthoFinder_OrthologousGroups_all_results_MNAT_DMEL.txt; Format: plain text)
Identified single copy orthologs (OrthoFinder) between M. natalensis and D. melanogaster.
(OrthoFinder_OrthologousGroups_single_copy_MNAT_DMEL.txt; Format: plain text
SI_Archive_S10
Checking Mnat_13309 to confirm identiy as Ago3 with M. bellicosus de novo data.
(1_checking_trin_mbel.txt; Format: plain text)
(2_trin_ago3_vs_dmel; Format: plain text)
(pfam_domains_ago3_contig.txt; Format: plain text)
(protocol.txt; Format: plain text)
(Trinity_contig.fa; FASTA-Format)
(workflow.docx; Format: MS Word
SI_Archive_S2
All Primers used for qRT-PCR
(Primers.txt; Format: plain text)
Transcriptome contigs used to find primers
(Contigs.fa; Format: fasta)
Expression Results of the qRT-PCR
(qRT-PCR.xlsx; Format: Excel-File
SI_Archive_S4
Multiple Sequence Alignment of all CO1 sequences (M. natalensis and M. bellicosus)
(co1_m_bell_m_nat.aligned.fas; FASTA format)
Distance Matrix (Kimura corrected)
(aligned.distmat; Format: plain text
SI_Archive_S9
Masked multiple sequence alignment for tree inference.
AGO1-3/Piwi/Aub set (ALICUT_ago1-3-piwi-aub.ginsi.vsm.fas; FASTA format
DellAmpio_et_al_2013: Supplementary Data
Supplementary File Archives of "Decisive Datasets in Phylogenomics: Lessons from Studies on the Phylogenetic Relationships of Primarily Wingless Insects
SI_Archive_S1
File with 13,959 expressed genes after HTSeq
(mnat_only_expressed_genes.txt; Format: plain text