Additional file 7 of Phylogenomics of palearctic Formica species suggests a single origin of temporary parasitism and gives insights to the evolutionary pathway toward slave-making behaviour

Figure S7 Phylogenetic tree based on the cox1 mitochondrial gene of 41 Formica species borrowed from GeneBank (NCBI ID indicated between parentheses). The tree was built using RAxML (GTR + GAMMA, 500 bootstrap replications). Nodes supported by a bootstrap inferior to 70 were removed. Nearctic species are highlighted in red. (PDF 35 kb

Additional file 1: Figure S1. of Molecular evolutionary rates are not correlated with temperature and latitude in Squamata: an exception to the metabolic theory of ecology?

Relationships between branch lengths and absolute latitude. (a) Major axis regressions drawn between the branch length of the species at higher and the branch length of the species at lower latitude (for each species pair). (b) Distribution of the lower (black) and the upper (white) boundaries of the confidence interval for the 1,000 major axis regressions presented in (a). Among our 1,000 replicates, the mean slope of the major axis regression between branches at higher and at lower absolute latitude was 1.1 (median slope = 1.09, 95 % CI: 0.77 to 1.49, drawn from 51 to 141 species pairs), indicating no significant effect of the absolute latitude on branch length. The lower boundaries of the confidence interval of the slope estimate were higher than 1 in 696 of 1,000 relationships (and the lower boundary was lower than 1 in 304 relationships). (DOC 1126 kb

Additional file 6 of Phylogenomics of palearctic Formica species suggests a single origin of temporary parasitism and gives insights to the evolutionary pathway toward slave-making behaviour

Figure S6 Phylogenetic tree of the ALLPOSITIONS supermatrix (1270,080 bp) built using RAxML by partitioning the supermatrix by codon positions (GTR + GAMMA model, 500 bootstrap replications). (PDF 2 kb

Additional file 2 of Phylogenomics of palearctic Formica species suggests a single origin of temporary parasitism and gives insights to the evolutionary pathway toward slave-making behaviour

Figure S2 Phylogenetic tree of the GAPLESS supermatrix (621,307 bp) built using RAxML (GTR + GAMMA model, 500 bootstrap replications). (PDF 2 kb

Additional file 1 of Phylogenomics of palearctic Formica species suggests a single origin of temporary parasitism and gives insights to the evolutionary pathway toward slave-making behaviour

Figure S1 Phylogenetic tree of the CLEAN supermatrix (970,619 bp) built using RAxML (GTR + GAMMA model, 500 bootstrap replications). (PDF 2 kb

completeMito_phyloBayes.tr

Cetartiodactyla phylogenetic tree obtained from PhyloBayes (CAT GTR Gamma 4 model). Branch lengths are given in number of substitutions per nucleotide site

Alignment of the Catalase gene

Alignment of the Catalase gene (nucleotides) in 9 Messor harvester ant species (52 individuals) and Pogonomyrmex barbatus. For Messor species, sequences of the two alleles (Allele 1 and Allele 2) are provided

hsc70-4 alignment (Messor barbarus)

Alignment of the hsc70-4 gene in Messor barbarus. Nucleotide ambiguity code (IUPAC) is used to signal heterozygosity: by example, a R codes for an A/G genotype, while A codes A/A and G codes for G/G

mitochondrial COX1 gene alignment (Messor barbarus)

Alignment of the COX1 gene in Messor barbarus (48 individuals) and M. capitatus

SuperGeneMito_Cetartio_bppml_branchLength_codon.tr

Cetartiodactyla phylogenetic tree after optimization of branch lengths with bppml (using the YN98 codon model). Branch lengths are given in number of substitutions per codon site