31 research outputs found
Miller et al VCF SNP genotypes
Miller et al VCF SNP genotype
Miller et al BAM File
Sequence alignments (one .bam file per individual) of Illumnia reads to the domestic sheep genome
NBR genotyoes
Microsatellite genotype data for bighorn sheep (Ovis canadensis) from National Bison Range in Montana, USA. Columns A-C contain locus names, linkage group (lg), and position on the linkage group respectively. Subsequent columns are individual genotypes. For individual genotypes row 1 indicates if the individual is an NBR founder (ParentPop1), a transplanted individual (ParentPop2), or a hybrid progeny (Hybrid); row 2 is the individual ID corresponding to the modeling table. Missing data is coded as NA/NA
NBR modeling_table
Data used for analyses of geographic ancestry and individual fitness. Column headings for columns A-G are as follows: ID = individual ID (corresponding to that in genotype data, Gender = sex of the sheep, h.index = hybrid index value as calculated from INTROGRESS analyses, Year_Birth = year of birth or introduction, Longevity = longevity as of 2010, Progeny = number of progeny that individual contributed to the pedigree, Introduced = binary indicator if that sheep was introduced to the population or not. Subsequent columns are genotypes at each locus coded as a factor with three levels (0, 1, or 2) corresponding to the number of alleles predicted to be derived from founders during the INTROGRESS analysis. Missing data is coded as NA
NBR_Data
Microsatellite genotypes for the National Bison Range population