Program for simulating and analyzing genotype data by Structure

The zipped file contains a number of files used to (1) simulate genotype data, (2) run Structure to analyze simulated data. A ReadMe file is also included

Seven empirical datasets for Gst and Hs correlation analysis

This zipped file contains seven published microsatellite and SNP datasets used in CoDiDi analysi

Input and output files

This zipped file contains all input files for simulations, all input files for the bat dataset, and output files from the analyses of simulated data and the bat dat

Simulated Data for COLONY analysis

This zipped file, SimuData.Zip, contains 5 folders, named as “Allele”, “Dup”, “Err”, “Loci”, “Robust”. Each folder contains a number of simulated input files for COLONY analysis, as described in detail in the ReadMe file

3 real datasets for Colony analysis of mistyping rates

This zipped file contains three real datasets in the format of Colony input files. In each input file, the assumed dropout and false allele rates of each marker can be modified manually before running Colony analysis

Program for bootstrapping human genotype data

The zipped file contains a number of files to do bootstrapping of the human genotype data (included), and to run Structure on the data. A ReadMe file is included in the package

SimuMigEst

The simulation package containing all of the programs and associated files needed to run the simulation

Simulation programs for Gst, Hs and correlations

This zipped file contains two simulation programs (source code in Fortran 90/95, and Windows executables), user's guides and example input files. The programs can be used to simulate genotype data under different migration and mutation models, and to calculate Gst, Hs, and their correlation from the simulated genotype data

Sturgeon polyploid microsatellite genotypes

multi-locus microsatllite genotypes for non-mendelian loci scored for lake sturgeon (Acipenser fulvescens) from Black Lake, Michiga

Simulated data

Simulated dat