Community and Landscape Dynamic Simulation Code

This code allows the simulation of landscape habitat loss and reserve designation and resulting community dynamics, as described in the article. The code relies on R and python and includes a 'README' file

Arabidopsis epigenome and climate datasets

Epigenome and genetic maps for Eurasian and Swedish Arabidopsis accessions. Also included are climate variables at these accession sites as well as R scripts to conduct RDA analyses

Simulation data

The final generation (generation 1250) of each simulation run and replicate. Simulations are divided into no selection simulations ("Nsims"), gradient selection simulations ("Gsims"), and discrete selection simulations ("H1/H5/H9sims")

Supplemental Table 4 from Topological features of a gene co-expression network predict patterns of natural diversity in environmental response

GO Functional enrichments for the largest over-enriched Cold modul

Supplemental Table 5 from Topological features of a gene co-expression network predict patterns of natural diversity in environmental response

GO Functional enrichments for the largest over-enriched Drought modul

Selection surfaces and sampling file

One of the gradient selection files ("gradient1024x1024_N0_S1.txt") and a full set of habitat configuration rasters (H1/H5/H9 with 10 replicates each). The 500 randomly sampled individuals are provided in "sample500.csv"

complete_coding_at4g25490

Coding region sequence for at4g25470 (CBF1) for all accessions used in this study

complete_coding_at4g25470

Coding region sequence for at4g25470 (CBF2) for all accessions used in this study

complete_coding_at4g25480

Coding region sequence for at4g25470 (CBF3) for all accessions used in this study

Appendix A. Additional information on functional traits, distribution, sampling, and phylogeny of Ficus species on our study plot.

Additional information on functional traits, distribution, sampling, and phylogeny of Ficus species on our study plot