11 research outputs found
Pezizales_mitospore_measurements
This file has mitospore measurements taken from 1 mm square of sporemat and counted on a hemocytometer under bright field microscopy at 1000x. Genus of Pezizales is in the field header to the left of rows, and the header over the collector number in the header for each column of spore measurements, which are in micrometers. At the top of the sheet are averages calculated for the 1 mm square of sporemat from which the spores were taken
Tuber_ITS_alignment
Tuber ITS alignment in FASTA format, Ambiguously aligned regions were excluded in GBlocks using the least stringent setting (Castresana, 2000; Talavera & Castresana, 2007), missing data is represented by "?" Sources of sequences include ascocarps, mitospore mats (taxon name preceded by "AM")and ectomycorrhizal roots (taxon name preceded by "EM")
Hydnobolites_ITS_alignment
This is an alignment of ITS sequences (ITS1, 5.8s, ITS2) from fruit bodies, ectomycorrhizal roots and mitotic spore mats
Pezizaceae_LSU_alnmnt
Pezizaceae LSU alignment in FASTA format, missing data is represented by "?" Sources of sequences include ascocarps, mitospore mats (taxon name preceded by "AM")and ectomycorrhizal roots (taxon name preceded by "EM"
PezizalesExclPezizaceaeLSU
Pezizales exclusive of Pezizaceae LSU alignment in FASTA format, missing data is represented by "?" Sources of sequences include ascocarps, mitospore mats (taxon name preceded by "AM")and ectomycorrhizal roots (taxon name preceded by "EM"
Pachyphloeus_alignment_ITS
Pachyphloeus ITS alignment in FASTA format, Ambiguously aligned regions were excluded in GBlocks using the least stringent setting (Castresana, 2000; Talavera & Castresana, 2007), missing data is represented by "?" Sources of sequences include ascocarps, mitospore mats (taxon name preceded by "AM")and ectomycorrhizal roots (taxon name preceded by "EM")
terfezia-peziz_ITS_algnmnt
Terfezia-peziza depress clade ITS alignment in FASTA format, Ambiguously aligned regions were excluded in GBlocks using the least stringent setting (Castresana, 2000; Talavera & Castresana, 2007), missing data is represented by "?" Sources of sequences include ascocarps, mitospore mats (taxon name preceded by "AM")and ectomycorrhizal roots (taxon name preceded by "EM")
Ectomycorrhizal contaminants on experimental roots
These ectomycorrhizal roots were selected and sequenced by ME Smith, RA Healy and GM Bonito in May of 2011. They come from sequenced root tips from axenically grown seedlings that were inoculated with mitospores, and then transferred to a growth chamber including other inoculated plants. None of the mitospore phylotypes were recovered from root tips, but three contaminant ectomycorrhizal species were sequenced from the roots. We think they came from water splash during watering of adjacent pots that had been purposely inoculated with Tuber borchii. Identifications were from ITS sequence similarity at 97%