Tests for sex-differential expression in pooled organs

Cuffdiff results file; Differential expression of all pooled organ genes between 5 male and 5 female blue tit

Tajima's D across all 25 kb windows of the blue tit genome

based on SNPs called from the transcriptome of 5 male and 5 female blue tits

Annotated SNPs in transcriptome common to both sexes

vcf file: annotated SNPs in transcriptome common to both sexes; annotated using SnpEff; based on 5 male and 5 female blue tits

Annotated SNPs in female-specific transcriptome

vcf file: annotated SNPs in female-specific transcriptome; annotated using SnpEff; based on 5 female blue tit

iHS values across all informative scaffolds

based on SNPs called from the transcriptome of 5 male and 5 female blue tits

Annotated SNPs in male-specifc transcriptome

vcf file: annotated SNPs in male-specific transcriptome; annotated using SnpEff; based on 5 male blue tit

Tests for sex-differential expression in gonads

Cuffdiff results files; differential expression of all gonadal genes between 5 male and 5 female blue tit

data_trait_ccattr

Table that contains male attractiveness phenotypes based on choice chamber trials (2 columns). Ind_ID: identifier of the individual; CCattr: attractiveness score

data_trait_beakcolour

Table that contains beak colour phenotypes (4 columns). Ind_ID: identifier of the individual; BeakColourDA: beak colour score based on discriminant analysis (for details see paper); Sex: sex of the individual (0 = female, 1 = male); Session: identifier for the measuring session

data_trait_cagefecundity

Table that contains fecundity data measured in cages (5 columns). Ind_ID: identifier of the individual; nEggs: number of eggs produced; Days: duration of the breeding period in days; nWeeks: duration of the breeding period in (fractions of) weeks; FecundityCagesWeek: average number of eggs produced per week of the breeding period