23,245 research outputs found
Energy-dependent quenching adjusts the excitation diffusion length to regulate photosynthetic light harvesting
An important determinant of crop yields is the regulation of photosystem II
(PSII) light harvesting by energy-dependent quenching (qE). However, the
molecular details of excitation quenching have not been quantitatively
connected to the PSII yield, which only emerges on the 100 nm scale of the
grana membrane and determines flux to downstream metabolism. Here, we
incorporate excitation dissipation by qE into a pigment-scale model of
excitation transfer and trapping for a 200 nm x 200 nm patch of the grana
membrane. We demonstrate that single molecule measurements of qE are consistent
with a weak-quenching regime. Consequently, excitation transport can be
rigorously coarse-grained to a 2D random walk with an excitation diffusion
length determined by the extent of quenching. A diffusion-corrected lake model
substantially improves the PSII yield determined from variable chlorophyll
fluorescence measurements and offers an improved model of PSII for
photosynthetic metabolism.Comment: 19 pages, 4 figures, 3 supplementary figure
Coarse Brownian Dynamics for Nematic Liquid Crystals: Bifurcation Diagrams via Stochastic Simulation
We demonstrate how time-integration of stochastic differential equations
(i.e. Brownian dynamics simulations) can be combined with continuum numerical
bifurcation analysis techniques to analyze the dynamics of liquid crystalline
polymers (LCPs). Sidestepping the necessity of obtaining explicit closures, the
approach analyzes the (unavailable in closed form) coarse macroscopic
equations, estimating the necessary quantities through appropriately
initialized, short bursts of Brownian dynamics simulation. Through this
approach, both stable and unstable branches of the equilibrium bifurcation
diagram are obtained for the Doi model of LCPs and their coarse stability is
estimated. Additional macroscopic computational tasks enabled through this
approach, such as coarse projective integration and coarse stabilizing
controller design, are also demonstrated
Multi-Brane Worlds and modification of gravity at large scales
We discuss the implications of multi-brane constructions involving
combinations of positive and negative tension brane and show how anomalously
light KK states emerge when negative tension ''-'' branes are sandwiched
between ''+'' branes. We present a detailed study of a ''+--+'' brane
assignment which interpolates between two models that have been previously
proposed in which gravity is modified at large scales due to the anomalously
light states. We show that it has the peculiar characteristic that gravity
changes from four dimensional (4D) to 5D at large distances and returns to 4D
at even larger scales. We also consider a crystalline universe which leads to a
similar structure for gravity. The problems associated with intermediate
negative tension branes are discussed and a possible resolution suggested.Comment: 28 pages, 6 figures,references adde
Brane Universe and Multigravity: Modification of gravity at large and small distances
We consider a modification of gravity at large distances in a Brane Universe
which was discussed recently. In these models the modification of gravity at
large distances is ultimately connected to existence of negative tension
brane(s) and exponentially small tunneling factor. We discuss a general model
which interpolates between Bi-gravity model and GRS model. We also discuss the
possible mechanism of stabilization for negative tension branes in AdS
background. Finally we show that extra degrees of freedom of massive gravitons
do not lead to disastrous contradiction with General Relativity if the
stabilization condition is
implemented.Comment: 12 pages, 4 eps figures, LaTe
Defect flows in minimal models
In this paper we study a simple example of a two-parameter space of
renormalisation group flows of defects in Virasoro minimal models. We use a
combination of exact results, perturbation theory and the truncated conformal
space approach to search for fixed points and investigate their nature. For the
Ising model, we confirm the recent results of Fendley et al. In the case of
central charge close to one, we find six fixed points, five of which we can
identify in terms of known defects and one of which we conjecture is a new
non-trivial conformal defect. We also include several new results on exact
properties of perturbed defects and on the renormalisation group in the
truncated conformal space approach.Comment: 35 pages, 21 figures. 1 reference adde
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