881 research outputs found
A multi-factor trafficking site on the spliceosome remodeling enzyme BRR2 recruits C9ORF78 to regulate alternative splicing
The intrinsically unstructured C9ORF78 protein was detected in spliceosomes but its role in splicing is presently unclear. We find that C9ORF78 tightly interacts with the spliceosome remodeling factor, BRR2, in vitro. Affinity purification/mass spectrometry and RNA UV-crosslinking analyses identify additional C9ORF78 interactors in spliceosomes. Cryogenic electron microscopy structures reveal how C9ORF78 and the spliceosomal B complex protein, FBP21, wrap around the C-terminal helicase cassette of BRR2 in a mutually exclusive manner. Knock-down of C9ORF78 leads to alternative NAGNAG 3′-splice site usage and exon skipping, the latter dependent on BRR2. Inspection of spliceosome structures shows that C9ORF78 could contact several detected spliceosome interactors when bound to BRR2, including the suggested 3′-splice site regulating helicase, PRPF22. Together, our data establish C9ORF78 as a late-stage splicing regulatory protein that takes advantage of a multi-factor trafficking site on BRR2, providing one explanation for suggested roles of BRR2 during splicing catalysis and alternative splicing
Characterization of SiGe/Ge heterostructures and graded layers using variable angle spectroscopic ellipsometry
Variable angle spectroscopic ellipsometry (VASE) has been used to characterize Si(x)Ge(1-x)/Ge superlattices (SLs) grown on Ge substrates and thick Si(x)Ge(1-x)/Ge heterostructures grown on Si substrates. Our VASE analysis yielded the thicknesses and alloy compositions of all layers within the optical penetration depth of the surface. In addition, strain effects were observed in the VASE results for layers under both compressive and tensile strain. Results for the SL structures were found to be in close agreement with high resolution x-ray diffraction measurements made on the same samples. The VASE analysis has been upgraded to characterize linearly graded Si(x)Ge(1-x) buffer layers. The algorithm has been used to determine the total thickness of the buffer layer along with the start and end alloy composition by breaking the total thickness into many (typically more than 20) equal layers. Our ellipsometric results for 1 (mu)m buffer layers graded in the ranges 0.7 less than or = x less than or = 1.0, and 0.5 less than or = x less than or = 1.0 are presented, and compare favorably with the nominal values
Bandgap Change of Carbon Nanotubes: Effect of Small Tensile and Torsional Strain
We use a simple picture based on the electron approximation to study
the bandgap variation of carbon nanotubes with uniaxial and torsional strain.
We find (i) that the magnitude of slope of bandgap versus strain has an almost
universal behaviour that depends on the chiral angle, (ii) that the sign of
slope depends on the value of and (iii) a novel change in sign
of the slope of bandgap versus uniaxial strain arising from a change in the
value of the quantum number corresponding to the minimum bandgap. Four orbital
calculations are also presented to show that the orbital results are
valid.Comment: Revised. Method explained in detai
Screening of suitable cationic dopants for solar absorber material CZTS/Se: A first principles study
The earth abundant and non-toxic solar absorber material kesterite Cu2ZnSn(S/Se)(4) has been studied to achieve high power conversion efficiency beyond various limitations, such as secondary phases, antisite defects, band gap adjustment and microstructure. To alleviate these hurdles, we employed screening based approach to find suitable cationic dopant that can promote the current density and the theoretical maximum upper limit of the energy conversion efficiency (P(%)) of CZTS/Se solar devices. For this task, the hybrid functional (Heyd, Scuseria and Ernzerhof, HSE06) were used to study the electronic and optical properties of cation (Al, Sb, Ga, Ba) doped CZTS/Se. Our in-depth investigation reveals that the Sb atom is suitable dopant of CZTS/CZTSe and also it has comparable bulk modulus as of pure material. The optical absorption coefficient of Sb doped CZTS/Se is considerably larger than the pure materials because of easy formation of visible range exciton due to the presence of defect state below the Fermi level, which leads to an increase in the current density and P(%). Our results demonstrate that the lower formation energy, preferable energy gap and excellent optical absorption of the Sb doped CZTS/Se make it potential component for relatively high efficient solar cells
Observation of the nonlinear Hall effect under time reversal symmetric conditions
The electrical Hall effect is the production of a transverse voltage under an
out-of-plane magnetic field. Historically, studies of the Hall effect have led
to major breakthroughs including the discoveries of Berry curvature and the
topological Chern invariants. In magnets, the internal magnetization allows
Hall conductivity in the absence of external magnetic field. This anomalous
Hall effect (AHE) has become an important tool to study quantum magnets. In
nonmagnetic materials without external magnetic fields, the electrical Hall
effect is rarely explored because of the constraint by time-reversal symmetry.
However, strictly speaking, only the Hall effect in the linear response regime,
i.e., the Hall voltage linearly proportional to the external electric field,
identically vanishes due to time-reversal symmetry. The Hall effect in the
nonlinear response regime, on the other hand, may not be subject to such
symmetry constraints. Here, we report the observation of the nonlinear Hall
effect (NLHE) in the electrical transport of the nonmagnetic 2D quantum
material, bilayer WTe2. Specifically, flowing an electrical current in bilayer
WTe2 leads to a nonlinear Hall voltage in the absence of magnetic field. The
NLHE exhibits unusual properties sharply distinct from the AHE in metals: The
NLHE shows a quadratic I-V characteristic; It strongly dominates the nonlinear
longitudinal response, leading to a Hall angle of about 90 degree. We further
show that the NLHE directly measures the "dipole moment" of the Berry
curvature, which arises from layer-polarized Dirac fermions in bilayer WTe2.
Our results demonstrate a new Hall effect and provide a powerful methodology to
detect Berry curvature in a wide range of nonmagnetic quantum materials in an
energy-resolved way
Increased versatility despite reduced molecular complexity evolution, structure and function of metazoan splicing factor PRPF39
In the yeast U1 snRNP the Prp39/Prp42 heterodimer is essential for early steps of spliceosome assembly. In metazoans no Prp42 ortholog exists, raising the question how the heterodimer is functionally substituted. Here we present the crystal structure of murine PRPF39, which forms a homodimer. Structure-guided point mutations disrupt dimer formation and inhibit splicing, manifesting the homodimer as functional unit. PRPF39 expression is controlled by NMD-inducing alternative splicing in mice and human, suggesting a role in adapting splicing efficiency to cell type specific requirements. A phylogenetic analysis reveals coevolution of shortened U1 snRNA and the absence of Prp42, which correlates with overall splicing complexity in different fungi. While current models correlate the diversity of spliceosomal proteins with splicing complexity, our study highlights a contrary case. We find that organisms with higher splicing complexity have substituted the Prp39/Prp42 heterodimer with a PRPF39 homodimer
A multi factor trafficking site on the spliceosome remodeling enzyme BRR2 recruits C9ORF78 to regulate alternative splicing
The intrinsically unstructured C9ORF78 protein was detected in spliceosomes but its role in splicing is presently unclear. We find that C9ORF78 tightly interacts with the spliceosome remodeling factor, BRR2, in vitro. Affinity purification mass spectrometry and RNA UV crosslinking analyses identify additional C9ORF78 interactors in spliceosomes. Cryogenic electron microscopy structures reveal how C9ORF78 and the spliceosomal B complex protein, FBP21, wrap around the C terminal helicase cassette of BRR2 in a mutually exclusive manner. Knock down of C9ORF78 leads to alternative NAGNAG 3 splice site usage and exon skipping, the latter dependent on BRR2. Inspection of spliceosome structures shows that C9ORF78 could contact several detected spliceosome interactors when bound to BRR2, including the suggested 3 splice site regulating helicase, PRPF22. Together, our data establish C9ORF78 as a late stage splicing regulatory protein that takes advantage of a multi factor trafficking site on BRR2, providing one explanation for suggested roles of BRR2 during splicing catalysis and alternative splicin
Advances in ab-initio theory of Multiferroics. Materials and mechanisms: modelling and understanding
Within the broad class of multiferroics (compounds showing a coexistence of
magnetism and ferroelectricity), we focus on the subclass of "improper
electronic ferroelectrics", i.e. correlated materials where electronic degrees
of freedom (such as spin, charge or orbital) drive ferroelectricity. In
particular, in spin-induced ferroelectrics, there is not only a {\em
coexistence} of the two intriguing magnetic and dipolar orders; rather, there
is such an intimate link that one drives the other, suggesting a giant
magnetoelectric coupling. Via first-principles approaches based on density
functional theory, we review the microscopic mechanisms at the basis of
multiferroicity in several compounds, ranging from transition metal oxides to
organic multiferroics (MFs) to organic-inorganic hybrids (i.e. metal-organic
frameworks, MOFs)Comment: 22 pages, 9 figure
Electromechanical properties of suspended Graphene Nanoribbons
Graphene nanoribbons present diverse electronic properties ranging from
semiconducting to half-metallic, depending on their geometry, dimensions and
chemical composition. Here we present a route to control these properties via
externally applied mechanical deformations. Using state-of-the-art density
functional theory calculations combined with classical elasticity theory
considerations, we find a remarkable Young's modulus value of ~7 TPa for
ultra-narrow graphene strips and a pronounced electromechanical response
towards bending and torsional deformations. Given the current advances in the
synthesis of nanoscale graphene derivatives, our predictions can be
experimentally verified opening the way to the design and fabrication of
miniature electromechanical sensors and devices based on ultra-narrow graphene
nanoribbons.Comment: 12 pages, 6 figure
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