Additional file 6: of A phylogenetic analysis of the Primnoidae (Anthozoa: Octocorallia: Calcaxonia) with analyses of character evolution and a key to the genera and subgenera

Figure S1a-i. Phylogenies with mapped ancestral state reconstructions using maximum parsimony and select maximum likelihoods (see text) for each morphological character. (PDF 1095 kb

Additional file 4: of A phylogenetic analysis of the Primnoidae (Anthozoa: Octocorallia: Calcaxonia) with analyses of character evolution and a key to the genera and subgenera

Table S3. Character state assignments for each genus or subgenus species-group from characters listed in Table 2. Numbers in parentheses correspond character designations from Cairns & Bayer [2]. (XLSX 11 kb

Additional file 3: of A phylogenetic analysis of the Primnoidae (Anthozoa: Octocorallia: Calcaxonia) with analyses of character evolution and a key to the genera and subgenera

Table S2. Data block assignments and Partition Finder results. Partition schemes and molecular models of evolution chosen by either AIC (Akaike Information Criterion) or BIC (Bayesian Information Criterion). (XLSX 36 kb

Additional file 1: of A phylogenetic analysis of the Primnoidae (Anthozoa: Octocorallia: Calcaxonia) with analyses of character evolution and a key to the genera and subgenera

Table S1A and S1B. Specimens sequenced with taxon name, sample ID, collection location, collection station, year collected, preservation type, type specimen information, and Genbank Accession numbers. (XLSX 27 kb

Additional file 5: of A phylogenetic analysis of the Primnoidae (Anthozoa: Octocorallia: Calcaxonia) with analyses of character evolution and a key to the genera and subgenera

Table S4. Outputs of ancestral state reconstructions using maximum likelihood for each character and for all nodes. (XLSX 126 kb

totalmatrix_structure

Data file with presence/absence matrix for multiple alleles in Symbiodinium. Used for analyses with the program STRUCTURE

Pflex_create

File used to generate program-specific input files for Plexaura flexuosa dataset using CREATE (https://bcrc.bio.umass.edu/pedigreesoftware/node/2). Example files created include those for Genepop, Arlequin, and Bayesass

singlehaps_create

File used to generate program-specific input files for Symbiodinium "singlehaps" dataset using CREATE (https://bcrc.bio.umass.edu/pedigreesoftware/node/2). Example files created include those for Genepop and Arlequin

singlehaps_structure

Data file with alleles for 5 haploid microsatellite markers used to run analyses in the program STRUCTURE for Symbiodinium