Targeting the Ets Binding Site of the HER2/neu Promoter with Pyrrole-Imidazole Polyamides

Three DNA binding polyamides (1-3) were synthesized that bind with high affinity (Ka = 8.7·10^9 M^-1 to 1.4·10^10 M^-1) to two 7-base pair sequences overlapping the Ets DNA binding site (EBS; GAGGAA) within the regulatory region of the HER2/neu proximal promoter. As measured by electrophoretic mobility shift assay, polyamides binding to flanking elements upstream (1) or downstream (2 and 3) of the EBS were one to two orders of magnitude more effective than the natural product distamycin at inhibiting formation of complexes between the purified EBS protein, epithelial restricted with serine box (ESX), and the HER2/neu promoter probe. One polyamide, 2, completely blocked Ets-DNA complex formation at 10 nM ligand concentration, whereas formation of activator protein-2-DNA complexes was unaffected at the activator protein-2 binding site immediately upstream of the HER2/neu EBS, even at 100 nM ligand concentration. At equilibrium, polyamide 1 was equally effective at inhibiting Ets/DNA binding when added before or after in vitro formation of protein-promoter complexes, demonstrating its utility to disrupt endogenous Ets-mediated HER2/neu preinitiation complexes. Polyamide 2, the most potent inhibitor of Ets-DNA complex formation by electrophoretic mobility shift assay, was also the most effective inhibitor of HER2/neu promoter-driven transcription measured in a cell-free system using nuclear extract from an ESX- and HER2/neu-overexpressing human breast cancer cell line, SKBR-3

A Simplified Cellular Automaton Model for City Traffic

We systematically investigate the effect of blockage sites in a cellular automaton model for traffic flow. Different scheduling schemes for the blockage sites are considered. None of them returns a linear relationship between the fraction of ``green'' time and the throughput. We use this information for a fast implementation of traffic in Dallas.Comment: 12 pages, 18 figures. submitted to Phys Rev

Exponential Operators, Dobinski Relations and Summability

We investigate properties of exponential operators preserving the particle number using combinatorial methods developed in order to solve the boson normal ordering problem. In particular, we apply generalized Dobinski relations and methods of multivariate Bell polynomials which enable us to understand the meaning of perturbation-like expansions of exponential operators. Such expansions, obtained as formal power series, are everywhere divergent but the Pade summation method is shown to give results which very well agree with exact solutions got for simplified quantum models of the one mode bosonic systems.Comment: Presented at XIIth Central European Workshop on Quantum Optics, Bilkent University, Ankara, Turkey, 6-10 June 2005. 4 figures, 6 pages, 10 reference

Scaling-up beginning farmers for wholesale production

With nearly 15 million people that live within 250 miles of Kansas City, the demand for local food is increasing. Local beginning farmers in the region want to reach an emerging wholesale market. However, selling directly to consumers demands different skills than the wholesale market requires. There are many educational programs offered in the region that are focused on direct to consumer sales. Unfortunately, there is a gap in educational programs that are offered to support beginning farmers that wish to expand into wholesale markets. In 2018, the Beginning Farmer Wholesale Project was started within the Growing Growers Kansas City program in congruence with the overall mission to improve the skills and livelihoods of the region’s growers. The project offers support and training to beginning farmers as they begin to navigate new market opportunities. It provides on-farm technical assistance, mentorship, opportunities to connect to wholesale buyers, a workshop series, a manual and an extensive foodshed GIS map. The ongoing project has seen several contributions to improving farmer access to wholesale markets. As of 2020, six workshops have been conducted that have covered a variety of farm production and marketing skills. Six farmer mentees have enrolled in the mentor program which enlists nine farmer mentors from across the region. Over twenty farmers have utilized the technical assistance service on their Kansas and Missouri farm operations and the farmer buyer matching program has resulted in thirteen beginning farmers gaining access to new markets. The project highlights the value of collaboration among organizations and the importance of offering multiple farmer services in order to improve wholesale access

Combinatorial Solutions to Normal Ordering of Bosons

We present a combinatorial method of constructing solutions to the normal ordering of boson operators. Generalizations of standard combinatorial notions - the Stirling and Bell numbers, Bell polynomials and Dobinski relations - lead to calculational tools which allow to find explicitly normally ordered forms for a large class of operator functions.Comment: Presented at 14th Int. Colloquium on Integrable Systems, Prague, Czech Republic, 16-18 June 2005. 6 pages, 11 reference

Markovian MC simulation of QCD evolution at NLO level with minimum k_T

We present two Monte Carlo algorithms of the Markovian type which solve the modified QCD evolution equations at the NLO level. The modifications with respect to the standard DGLAP evolution concern the argument of the strong coupling constant alpha_S. We analyze the z - dependent argument and then the k_T - dependent one. The evolution time variable is identified with the rapidity. The two algorithms are tested to the 0.05% precision level. We find that the NLO corrections in the evolution of parton momentum distributions with k_T - dependent coupling constant are of the order of 10 to 20%, and in a small x region even up to 30%, with respect to the LO contributions.Comment: 32 pages, 9 pdf figure

Dobiński relations and ordering of boson operators

We introduce a generalization of the Dobiński relation, through which we define a family of Bell-type numbers and polynomials. Such generalized Dobiński relations are coherent state matrix elements of expressions involving boson ladder operators. This may be used in order to obtain normally ordered forms of polynomials in creation and annihilation operators, both if the latter satisfy canonical and deformed commutation relations

The Reduction of Flavins by Borohydride: 3,4-Dihydroflavin

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/66296/1/j.1432-1033.1969.tb00621.x.pd

The Map is Not Which Territory?: Speculating on the Geo-Spatial Diffusion of Ideas in the Arab Spring of 2011

The process by which social movements move through time and space can be understood as a process of innovation diffusion of memes or ideas. This process of diffusion may be traceable through computational linguistics and map geocoding of the linguistic memes employed by such movements. A Visualizing Information Space In Ontological Networks (VISION) method is described and illustrated with web-based search results of keywords relevant to Arab Spring. Using map algebra, and with the potential for using computational linguistics, the intent is to demonstrate the feasibility of both the theoretical model of diffusion, as well as the relevance of the geospatial dimension in understanding another dimension of diffusion—the meaning space of ideas as they spread through new media. Such methodology holds substantial promise for understanding the communicative dynamics of social movements and social influence