Reference library for arctic and boreal bryphytes

Arctic and boreal bryophyte reference library, chloroplast P6-loop trnL (UAA) intron, c-h primers

sa_pDNA_107ind_3190char

pDNA sequence file in nexus format. See description in ReadMe file

sa_AFLP_458ind_335char

AFLP data matrix (0;1). See description in the readMe file

Transmission ratio distortion across the <i>Draba nivalis</i> linkage map.

<p>Histograms indicate the direction and magnitude of deviation of the parental homozygote frequency from the Mendelian expectation of 0.25 as positive in case of AA (male) excess and BB (female) deficit, or negative in case of AA deficit and BB excess. For dominant markers, either the AA or BB excess / deficit is indicated by the black bars. For co-dominant markers, the black bar indicates the AA excess, whereas the red lines indicate the BB deficit.</p

QTL mapping of <i>Draba nivalis</i>.

<p>Results from QTL mapping of the F₂ population of <i>Draba nivalis</i>, indicating the 95% significance threshold value for each trait. The marker closest to the LOD score peak for the particular QTL is indicated (LOD score 1 indicate the LOD peak in the initial analysis and LOD score 2 indicate the LOD peak after the effects of other QTLs were accounted for). Percent PhenotypicVariation Explained (PVE) is indicated. Ratio indicates the proportion of homozygotes for AA (paternal alleles), heterozygotes, and homozygotes for BB (maternal alleles). Mean value for each trait is indicated for homozygote F₂ individuals for paternal alleles (AA), heterozygote F₂ individuals (AB) and homozygote F₂ individuals for maternal alleles (BB), with inferred genotypes in italics.</p

Bliss_vp1_embl113.tag

The unique P6 loop trnL sequences produced by amplification of DNA with the primers trnL_g and trnL_h preserved in a sediment core spanning the Holocene from Bliss Lake, Peary Land, North Greenland. The data was recovered from DNA preserved in a sediment core spanning the Holocene from Bliss Lake, Peary Land, North Greenland. These sequences were recovered in the first round of amplification and sequencing of vascular plant DNA, as detailed in the associated publication (vascular plant dataset 1, "vp1"). Taxonomic identification of sequences was inferred using a reference library formatted from the EMBL Nucleotide Database standard release 113 by extracting sequences of the targeted region using ecoPCR (Ficetola et al. 2010). Further details can be found in the ReadMe file

Walia_goat_diet_afroalp.tag

Walia_goat_diet_afroalp.ta

Afro-alpine_taxonomic_ref_library_v2

Sequences of the taxonomic reference library version 2.0 for the African alpine flora. Sequences cover the P6 loop of the trnL. Header lines contain the species names followed by identity numbers (O-DP numbers) that correspond to specimen numbers in the herbarium of the Natural History Museum, University of Oslo, Norway

Bliss_diat_embl113.tag

The unique rbcL sequences produced by amplification of DNA with the primers rbcL_705f & rbcl_808r as detailed in the associated publication. The data was recovered from DNA preserved in a sediment core spanning the Holocene from Bliss Lake, Peary Land, North Greenland. Taxonomic identification of sequences was inferred using a reference library formatted from the EMBL Nucleotide Database standard release 113 by extracting sequences of the targeted region using ecoPCR (Ficetola et al. 2010). Further details can be found in the ReadMe file

Walia_goat_diet_embl113.tag

Walia_goat_diet_embl113.ta