Diversification of spatiotemporal expression and copy number variation of the echinoid hbox12/pmar1/micro1 multigene family

Changes occurring during evolution in the cis-regulatory landscapes of individual members of multigene families might impart diversification in their spatiotemporal expression and function. The archetypal member of the echinoid hbox12/pmar1/micro1 family is hbox12-a, a homeobox-containing gene expressed exclusively by dorsal blastomeres, where it governs the dorsal/ventral gene regulatory network during embryogenesis of the sea urchin Paracentrotus lividus. Here we describe the inventory of the hbox12/pmar1/micro1 genes in P. lividus, highlighting that gene copy number variation occurs across individual sea urchins of the same species. We show that the various hbox12/pmar1/micro1 genes group into three subfamilies according to their spatiotemporal expression, which ranges from broad transcription throughout development to transient expression in either the animal hemisphere or micromeres of the early embryo. Interestingly, the promoter regions of those genes showing comparable expression patterns are highly similar, while differing from those of the other subfamilies. Strikingly, phylogenetic analysis suggests that the hbox12/pmar1/micro1 genes are species-specific, exhibiting extensive divergence in their noncoding, but not in their coding, sequences across three distinct sea urchin species. In spite of this, two micromere-specific genes of P. lividus possess a TCF/LEF-binding motif in a similar position, and their transcription relies on Wnt/ f-catenin signaling, similar to the pmar1 and micro1 genes, which in other sea urchin species are involved in micromere specification. Altogether, our findings suggest that the hbox12/pmar1/micro1 gene family evolved rather rapidly, generating paralogs whose cis-regulatory sequences diverged following multiple rounds of duplication from a common ancestor

Investigation on the pollen morphology of traditional cultivars of Prunus species in Sicily

In this study pollen grains of 13 cultivars and 3 rootstocks belonging to 5 species (P. armeniaca, P. domestica, P. dulcis, P. persica, P. avium) of the genus Prunus collected from North-East Sicily were examined for the micromorphological characterization through the scanning electron microscopy (SEM). The length of polar axis (P) and the equatorial diameter (E) of grain, P/E ratio, the length of colpi (C), diameter of perforations (DP) and the number of perforations in 25 μm2 (PN), the width of muri (WM), the distance between muri (DM) and their number in 25 μm2 (MN), the width of grooves (WG) were measured and their variation was compared among studied taxa. Moreover multivariate statistical analysis was carried out to distinguish morphometric information from measured parameters. All pollen grains are trizonocolpate, isopolar, medium-large sized and their shape varies from prolate to perprolate. Regarding outline pollen grains are subtriangular in polar view and elliptic in equatorial view. Exine sculpturing is striate with perforations on grain surface. The arrangement of ridges appears roughly parallel but too sloped (sometimes curved) compared to polar axis, or branched and oriented in different directions, or perfectly parallel or more irregular with bifurcated ridges often sinuous. The analyses showed a great variability (particularly in P. domestica cultivars) related in some cases to the diversity in the morphological features of the leaves and the fruits of the investigated entities

Common Short Selling and Excess Comovement

We show that common short sold capital can explain future four-factor excess return correlation one month ahead, controlling for many pair characteristics, including similarities in size, book-to-market, and momentum. We explore the possible explanations that could give rise to this result. Contrary to the predictions of price pressure, we find that the relationship weakens significantly with stock illiquidity. Instead, consistent with the informed trading hypothesis, the relationship is stronger when short positions originate from hedge funds, from active investors, and from short sellers with high past performance. Stocks connected by common short sellers are associated with non-transitory negative cumulative abnormal returns. Finally, we show that our results can be used to obtain diversifications benefits

BILATERAL RENAL ARTERY STENOSIS IN A HYPERTENSIVE LUPUS PATIENT WITHOUT RENAL DYSFUNCTION: A CASE REPORT

Systemic lupus erythematosus (SLE) is associated with a high prevalence of atherosclero-sis and an enhanced cardiovascular mortality. In adult subjects, several studies have shown the coexistence of SLE and renal artery stenosis, most of them with unilateral in-volvement or with renal dysfunction. We observed a 62-year-old man with SLE and a 10-year history of moderate-to-severe hy-pertension who was admitted to our hospital because of uncontrolled blood pressure val-ues (152/95 mmHg), despite drug therapy. No signs of renal impairment were evident. After an initial physical examination, which presented a periumbilical bruit, a renal ultra-sound was performed with evidence of bilateral renal artery stenosis. An angio-MR study also confirmed the diagnosis and showed a double renal artery on the right side. Many different factors can contribute to the bilateral renal artery stenosis in this patient. Chronic inflammatory state associated to SLE, metabolic alterations with dyslipidemia and steroid therapy may all be involved in the development of the renal atherosclerotic le-sions

The effect of body mass index on chest trauma severity and prognosis

AIM: Patients with thoracic trauma constitute one third of all the trauma cases, in west Sicily were recorded 941 thoracic trauma during the period between 2006 and 2009. Sicily is one of the Italian regions with the highest rate of obesity: some studies have demonstrated that obesity is an independent risk factor for mortality in high energy blunt traumas. MATERIAL OF STUDY: This study was conducted with trauma patients older than 20 years old who presented to our Department during the last five years. We only included thoracic injuries and politrauma with a thoracic involvement and a BMI > 25- Patients were divided into two groups: HET and LET patients. RESULTS: Thoracic trauma was more common in patients with a BMI > 25 than in normo-weight and clinic admission rate, length of hospital stay and ISS score increased in proportion with the increase of BMI. Both HET (high energy trauma) and LET (low energy trauma) revealed that overweight, obese and morbidly obese patients had greater admissions and length of hospital stay. DISCUSSION: The overweight and obese population has increased substantially over the last two decades and 61,5% of the Sicilian population is above normal weight. A large body mass with excess adiposity may contribute to HET injuries in several ways. Obesity has a number of comorbidities that reduce chances of recovery in overweight and obese patients experienced thoracic trauma both HET and LET. CONCLUSION: Obesity increases morbidity independently of injury severity in thoracic trauma patients. As BMI increased, length of hospital stay increased and prognosis deteriorates

Robot’s Inner Speech Effects on Human Trust and Anthropomorphism

Inner Speech is an essential but also elusive human psychological process that refers to an everyday covert internal conversation with oneself. We argued that programming a robot with an overt self-talk system that simulates human inner speech could enhance both human trust and users’ perception of robot’s anthropomorphism, animacy, likeability, intelligence and safety. For this reason, we planned a pre-test/post-test control group design. Participants were divided in two different groups, one experimental group and one control group. Participants in the experimental group interacted with the robot Pepper equipped with an over inner speech system whereas participants in the control group interacted with the robot that produces only outer speech. Before and after the interaction, both groups of participants were requested to complete some questionnaires about inner speech and trust. Results showed differences between participants’ pretest and post-test assessment responses, suggesting that the robot’s inner speech influences in participants of experimental group the perceptions of animacy and intelligence in robot. Implications for these results are discussed

Optimum Filter Synthesis with DPLMS Method for Energy Reconstruction

Optimum filters are granted increasing recognition as valuable tools for parametric estimation in many scientific and technical fields. The DPLMS method, introduced some twenty years ago, is effective among the synthesis algorithms since it derives the optimum filters directly from the experimental signal and noise waveforms. Two new extensions of the DPLMS method are here presented. The first one speeds up the synthesis phase and improves the energy estimation by synthesizing optimum filters with automatically designed flat-top length. The second one improves the quality of parameter estimation in multi-channel systems by taking advantage of the inter-channel noise correlation properties. The theoretical and functional aspects behind the DPLMS method for optimum filter synthesis are first recalled and illustrated in more detail. The two new DPLMS extensions are subsequently introduced from the theoretical viewpoint and more thoroughly considered from the applicative perspective. The DPLMS optimum filters have been applied first to simulated signals with various amounts and characteristics of superimposed noise and then to the experimental waveforms acquired from a solid-state Ge detector. The results obtained are considered from both the absolute viewpoint and in comparison with those of more traditional, suboptimal filters. The results demonstrate the effectiveness of the two new DPLMS extensions. For single-channel energy estimations, the optimum filters provide comparatively better results than the other filters. The DPLMS multi-channel optimum filters further enhance the quality of the estimations, compared to single-channel optimum filters, with non-negligible inter-channel noise correlation. The effectiveness and robustness of the DPLMS method in synthesizing high-quality filters for energy estimation will be tested soon within leading-edge multi-channel physics experiments.Comment: 15 pages, 13 figure

THE BOTANICAL GARDEN \u201cBERNARDINO DA UCRIA\u201d IN THE NATURAL PARK OF THE NEBRODI (SICILY) AND ITS MISSION TO CONSERVE, EXPLOIT AND SPREAD LOCAL AGROBIODIVERTITY AND OFFICINAL PLANTS

In Sicily, the academic botanical gardens of Catania, Messina and Palermo have been historically exerting a multiplicity of activities ranging from maintenance of ex situ collections to plant conservation policy, practice and ecological restoration, along with more traditional functions related to education and academic research. In the last decade\u2019s, two new botanical gardens the \u201cNuova Gussonea\u201d and the \u201cBernardino da Ucria, were created in Sicily, with the aim to play more delimited, yet modern and complementary roles. The garden \u201cNuova Gussonea\u201d, within the Etna Natural Park, is mostly devoted to collect and preserve the native flora of the Mount Etna, with a special focus on endemic and rare plants and their promotion to a wider public. The garden \u201cBernardino da Ucria\u201d, in the Nebrodi Natural Park, is mainly specialized in promoting the local culture and to collect and preserve the agro-biodiversity of officinal plants in the Nebrodi territory. It is located in the homonymous village in the Messina district where the famous \u201cdemonstrator of plants\u201d and co founder of the Botanical Garden of Palermo University was born. Noteworthy, within Sicily the Nebrodi area is undoubtedly the widest and richest in traditional activities regarding agriculture, sheep farming and sylviculture, which produced an agrobiodiversity heritage often representative of individual community cultures. Initially promoted by Palermo University and sustained by the Nebrodi Regional Park, this garden comprises the \u201cBanca vivente del Germoplasma vegetale dei Nebrodi\u201d. Accessions conserved in vivo so far include cultivars of crops (Corylus, Pyrus, Malus, Prunus sp. pl, Ficus, Juglans), vegetables (Phaseolus and Lycopersicum) and officinal plants, that are in part representative of local agricultural practices. Among crops, the collections of Ficus, Pyrus and Corylus are remarkable; while among vegetables, the beans (Phaseolus) are represented by over 65 distinct cultivars, comprising 57 climbing and 8 dwarf species (1). Additionally, the garden\u2019s bank hosts several botanical collections unrelated to the local flora, representative of officinal and ornamental genus, such as Salvia, Helleborus, Paeonia and Camelia. The cryopreserved accessions so far encompass the bean cultivars, mainly found within the Nebrodi Park area. The aim of this particular collection is to further exploit the local agricultural and food heritage by recovering and spreading among local farmers of autochthonous cultivars under extinction risk. Moreover, the garden has recently been equipped with a molecular biology laboratory, performing studies on the genetic diversity of the accessions, as well as activities instrumental to the creation of a related DNA bank, interconnected with the Palermo Botanical garden bank (HBP-Bank). In 2011, the botanical garden of Ucria hosted the Summer School \u201cKnowledge, conservation and management of plant biodiversity of the Mediterranean mountain systems\u201d, organized by Palermo University together with OPTIMA, and financially sponsored by the Nebrodi Park. Similarly, the Summer School \u201cManagement of plant biodiversity in the Mediterranean: ex situ conservation and germplasm banks\u201d will be held in 2016. The activities of the new Ucria botanical garden and its germplasm bank, is supported by a dedicated Consortium, established by the Nebrodi Park together with Palermo University. The botanical garden \u201cBernardino da Ucria\u201d is open to public in the spring and summer period. It is also offering didactic visits for educational purposes to several schools

Whole genome semiconductor based sequencing of farmed European sea bass (Dicentrarchus labrax) Mediterranean genetic stocks using a DNA pooling approach

European sea bass (Dicentrarchus labrax) is an important marine species for commercial and sport fisheries and aquaculture production. Recently, the European sea bass genome has been sequenced and assembled. This resource can open new opportunities to evaluate and monitor variability and identify variants that could contribute to the adaptation to farming conditions. In this work, two DNA pools constructed from cultivated European sea bass were sequenced using a next generation semiconductor sequencing approach based on Ion Proton sequencer. Using the first draft version of the D. labrax genome as reference, sequenced reads obtained a total of about 1.6 million of single nucleotide polymorphisms (SNPs), spread all over the chromosomes. Transition/transversion (Ti/Tv) was equal to 1.28, comparable to what was already reported in Salmon species. A pilot homozygosity analysis across the D. labrax genome using DNA pool sequence datasets indicated that this approach can identify chromosome regions with putative signatures of selection, including genes involved in ion transport and chloride channel functions, amino acid metabolism and circadian clock and related neurological systems. This is the first study that reported genome wide polymorphisms in a fish species obtained with the Ion Proton sequencer. Moreover, this study provided a methodological approach for selective sweep analysis in this species

Assessing Cephalopods Fisheries in the Strait of Sicily by Using Poor Data Modeling

Cephalopods, including octopuses, squids, and cuttlefishes, are exploited by both bottom trawl and small-scale fisheries (SSF) in most of the Mediterranean areas. Bottom trawl fisheries regard cephalopods as a valuable bycatch, whereas for SSF, they are among the main target species. Cephalopods account for a relatively small proportion of the total landings in the Mediterranean. However, from an economic point of view, four cephalopods, Eledone cirrhosa, Eledone moschata, Octopus vulgaris, and Sepia officinalis, account for approximately 15% of the total landing value. Despite their economic importance, there are very few stock assessments of cephalopods in the Mediterranean because it is difficult to assess them by classical age-based methods, given their short life-cycles, and highly variable growth and recruitment. The production of E. cirrhosa, E. moschata, Illex coindettii, Loligo vulgaris, O. vulgaris, S. officinalis, and Todaropsis eblanae in the waters off the south of Sicily accounts for approximately 8% of the total Mediterranean yield of cephalopods. This study presents the first attempt to assess the state of these cephalopods in the Strait of Sicily by using surplus production models. Since species-wise landing statistics may be unreliable because of their morphological similarity, some octopuses (E. cirrhosa and E. moschata) and ommastrephid squids (I. coindetii and T. eblanae) were assessed combined. Landing data and abundance indices from trawl surveys were used to describe cephalopod stock dynamics through the Bayesian State Space Schaefer model (BSM) and Surplus Production model in Continuous Time (SPiCT) models. As survey data were not considered reliable indicators of their abundance, O. vulgaris, S. officinalis, and L. vulgaris stocks were assessed using the Catch-Maximum Sustainable Yield (CMSY) model. Overall, squid and cuttlefish stocks were observed to be in healthy conditions. However, assessments of octopus stocks indicated that their condition was critical or recovering. Here, we discuss the different stock statuses in the light of evolving fisheries and environmental factors in the area over time. Although cephalopods are not a priority in the current management system of Mediterranean fisheries, the importance of these species in the food web and their relevance for SSF underline their importance and their exploitation status should be periodically evaluated