Razgour_etal15_M_escalerai_MrBayes_input

Nexus input file of collapsed Myotis escalerai haplotypes for MrBayes phylogenetic analysis

Razgour_etal15_M_escalerai_MrBayes_tree.con

MrBayes tree file underlying the phylogeny for Myotis escalerai cytochrome b haplotypes

MHC alleles and STR genotypes of wolves in Italy

MHC alleles and STR genotypes of wolves in Ital

Razgour_etal15_MolEcol_Structure_Results

Structure results and individual assignments for Myotis escalerai full and no relatives microsatellite datasets

Razgour_etal15_Structure_all

Structure input file for full Myotis escalerai microsatellite dataset

Razgour_etal15_Structure_no_relatives

Structure input file for Myotis escalerai microsatellite dataset with relatives removed

European wildcat microsatellites dataset

The File contains the raw microsatellites database in GenAlEx format for 1124 cat samples used in the analyses, characterised by 31 loci. For each samples is provided the sampling location, as reported in Tables, Figures and main taxt of the manuscript.This file can be converted to other formats using GenAlEx

MHC DRB1, DQA1, DQB1 genotypes

MHC reconstructed genotypes for each of the 47 wolf (Canis lupus) breeders analyzed in this study. For each breeder, the name of the pack where it reproduced is indicated (with names as from Caniglia et al. 2014), together with its alleles at the three MHC class II loci DRB1, DQA1, and DQB1, as identified after phasing (details available in the Materials and Methods section in the paper). Allele names follow the official DLA nomenclature committee. GenBank accession numbers are also indicated and the corresponding records can be accessed by clicking on the hyperlinks in the text. In the breeder IDs, the letter ‘W’ stands for ‘wolf’ and is followed by the initials of the province where the animals were non-invasively sampled for the first time, by a numeric identifier and by the letter ‘F’ for females or ‘M’ for males

SNPs_publication_ATCG

file 1: 'SNPs_publication_ATCG': this file contains the raw SNPs database in GenAlEx format for two sets of samples (sheets 1 and 2): sheet 1: SNPs data for all 274 cat samples used in the analyses (139 domestic cats - FCA; 130 putative European wildcats - FSI; 5 known hybrids FCA x FSI), characterised by 158 loci; sheet 2: SNPs data for 226 cat samples (139 domestic cats - FCA; 82 European wildcats - FSI; 5 known hybrids FCA x FSI), characterised by 158 loci. This sample set was created to exclude possible hybrids from the representatives of European wildcats. These files can be converted to other formats using GenAlEx

Macrosatellites_6digit

Genotypes of 448 individual salamanders for 16 microsatellites, used for genetic population structure analyses. ID_lab: individual ID; POP: sampling population; LOCPRIOR: sampling location used as LOCPRIOR in STRUCTURE analyses; 16 columns for the diploid macrosatellites loci (zeros indicate not genotyped alleles)