Ecological importance of soil bacterivores for ecosystem functions

BackgroundBacterivores, mostly represented by protists and nematodes, are a key component of soil biodiversity involved in soil fertility and plant productivity. In the current context of global change and soil biodiversity erosion, it becomes urgent to suitably recognize and quantify their ecological importance in ecosystem functioning.ScopeUsing meta-analysis tools, we aimed at providing a quantitative synthesis of the ecological importance of soil bacterivores on ecosystem functions. We also intended to produce an overview of the ecological factors that are expected to drive the magnitude of bacterivore effects on ecosystem functions.ConclusionsBacterivores in soil contributed significantly to numerous key ecosystem functions. We propose a new theoretical framework based on ecological stoichiometry stressing the role of C:N:P ratios in soil, microbial and plant biomass as important parameters driving bacterivore-effects on soil N and P availability for plants, immobilization of N and P in the bacterial biomass, and plant responses in nutrition and growth

Modification of a commercial dna extraction kit to simultaneously recover rna, safely and rapidly, and to assess molecular biomass of the total and the active part of microbial communities, from soils with diverse mineralogy and carbon content : S11.04-P -15

We have modified a commercial DNA extraction kit for soil to simultaneously co-extract RNA. In this new procedure RNA and DNA are separated by two selective purifications in cascade without the need of DNAase or RNAse digestion. Consequently DNA and RNA are respectively purified from the whole co-extraction solution. Nucleic acids extraction is based on the action of SDS coupled with an efficient bead-beating step, but it does not require any solvent. Avoiding the use of solvents, which are damaging for human health and environmental quality, was one of our most important motivations to develop this protocol. In a second time, we have optimized this protocol to improve the DNA and RNA yield, but kipping those yields below the saturation limit of the kit to assess and quantify the variations of molecular biomass of the total (DNA) and the active (RNA) part of microbial communities in natural samples. We have also introduced a first step of homogenization of soil sample in liquid nitrogen to improve the reliability of the fungal 18S gene sequence quantification. Finally, we have shown that this protocol can be applied to a wide diversity of soils whatever their mineralogy and metal content (2 Ferralsols, 1 Vertisol, 2 Andosols from Madagascar), texture or biomass content (1 poor sandy soil from Congo and one carbon rich temperate soil sample submitted or not to a 1 month cold stress). * E Tournier, L. Amenc and AL. Pablo contributed equally to this study. (Texte intégral

Earthworm management in tropical agroecosystems

A worldwide survey of earthworms in the humid tropics revealed that 51 exotics and 151 native species are commonly found in tropical agroecosystems. On the basis of frequency records and climatic and edaphic ranges, 21 exotics and 27 native species have been selected as possible candidates for manipulation. A multivariate analysis separated these species into four groups : (i) native species with wide edaphic and medium climatic tolerances ; (ii) exotic species with wide climatic and edaphic tolerances ; (iii) native and exotic species with narrow edaphic tolerances but more resistant to climatic variations ; and (iv) native species with limited tolerance for climatic and edaphic variations. Regarding management, species of group (ii) seem to be the most adaptable, both at regional and local levels (multipurpose species) ; group (i) can be managed for specific climatic conditions whereas group (iii) should be managed in specific soil environments. Species of group (iv) may only be managed at a very local scale. (Résumé d'auteur