Phenotypic data for the 856 trees

Phenotypic data for the 856 trees of the experimental population. Data include information on the progeny trial (called landscape in the datafile), block,soil type, planting spacing, age at measurement in years, followed by the trait data, mean annual volume growth increment (MAI), basic wood density (BWD) and screened cellulose pulp yield (SPY). Please note that SNP data were available only for 768 trees of these 856 phenotyped trees as described in the pape

Pedigree data for the population

Expected pedigree data for the experimental population of full sib families based on the pedigree registered by the breeder. Individuals used in the study go from ID 11 to 856

SNP Data for 24,806 polymorphic SNPs

SNP Data for 24,806 polymorphic SNPs in 768 individuals of the 856 individuals used in the study. SNP data were generated using the EuCHIP60K. You will find detailed info on the SNP contained in this chip (genome location, target SNP, flanking sequence) in Silva-Junior et al. (2015). A flexible multi-species genome-wide 60K SNP chip developed from pooled resequencing 240 Eucalyptus tree genomes across 12 species. New Phytologist 206(4): 1527-1540. Please note that SNP data was available for 768 trees of the 856 trees phenotyped, as described in the pape

Molecular mechanisms probably involved in plant colonization and plant growth promotion identified in the <i>H. seropedicae</i> SmR1 genome.

<p>Plant signals can modulate the expression of bacterial genes coding for adhesins, type IV <i>pili</i> and enzymes of lipopolysaccharide (LPS) synthesis, triggering bacterial attachment to root surfaces. The molecular communication involves bacterial protein secretion and phytohormones to stimulate plant growth and modulate plant defense response. In addition, modulation of plant ethylene levels by ACC deaminase may contribute to plant growth promotion. The success of the endophytic association depends on a compatible genetic background that leads to benefits for both organisms.</p

General features of the genome of <i>Herbaspirillum seropedicae</i> SmR1.

<p>General features of the genome of <i>Herbaspirillum seropedicae</i> SmR1.</p

Proposed pathways for aromatic compounds metabolism in <i>H. seropedicae</i> SmR1.

<p>Proposed pathways for aromatic compounds metabolism in <i>H. seropedicae</i> SmR1.</p

The genome of <i>Herbaspirillum seropedicae</i> SmR1.

<p>From inside to outside 1) G+C content; 2) GC skew; 3) genes color-coded according the COG functional categories; genes in the + strand and − strand are represented in the inside and outside circles respectively; 4) rRNAS operons; 5) putative horizontally transferred regions identified using IVOM: light red indicates low score and dark red indicates high score; 6) regions of <i>H. seropedicae</i> genome identical to castor bean (<i>Ricinus communis</i>) sequences (minimum of 200 bp in length and higher than 90% in identity).</p

The type III secretion system gene cluster of <i>H. seropedicae</i> SmR1 and other organisms.

<p>Genes of the same color in different organisms are homologous. Genes colored in black have no counterpart in the genomic regions shown.</p