Filtered Hapmap

Hapmap of SNPs after initial filtering. SNPs have been filtered to include 30% of all taxa, 80% of all sites. Individuals are identified as: MB - Mantoloking Basin, MC - Mantoloking Creek, MP - Mantoloking Pond, RB - Rutgers Basin, RC - Rutgers Creek, RP - Rutgers Pond, SB - Stone Harbor Basin, SC - Stone Harbor Creek, SP - Stone Harbor Pon

Final Hapmap

Hapmap of SNPs used in final analyses. SNPs have been filtered to include 30% of all taxa, 80% of all sites, and a 5% minimum allele frequency. SNPs in significant LD (p < 0.01) have also been removed. Individuals are identified as: MB - Mantoloking Basin, MC - Mantoloking Creek, MP - Mantoloking Pond, RB - Rutgers Basin, RC - Rutgers Creek, RP - Rutgers Pond, SB - Stone Harbor Basin, SC - Stone Harbor Creek, SP - Stone Harbor Pon