data_dryad.tar

data_dryad.ta

Chromosomal regions under selection.

<p>Chromosomal regions under selection.</p

Details of the haplotype structure within the four significant footprints of selection identified.

<p>For each of the four regions, the decays of EHH (SEN ancestral and derived allele) and EHHS (for SEN, EUT and ZEB populations) from the core SNP located under the peak position are plotted in the leftmost panel. Haplotype bifurcation diagrams for both the ancestral (in red in the center panel) and derived allele (in blue in the rightmost panel) are also represented.</p

Heterozygosity (HZ), inbreeding coefficient (F_IS) for each breed and differentiation (F_ST) of SEN vs other breeds.

<p>Heterozygosity (HZ), inbreeding coefficient (F_IS) for each breed and differentiation (F_ST) of SEN vs other breeds.</p

Plots over the genome of the SEN iHS (a) and ZEB/SEN (b) and EUT/CGU (c) Rsb scores for each SNP.

<p>Plots over the genome of the SEN iHS (a) and ZEB/SEN (b) and EUT/CGU (c) Rsb scores for each SNP.</p

Results of the linear mixed effects model on PCV.

<p>Results of the linear mixed effects model on PCV.</p

Results of the generalized linear mixed effects model on parasitaemia.

<p>Results of the generalized linear mixed effects model on parasitaemia.</p

Evolution of TWBC over the time course of infection.

<p>TWBC is expressed as million leukocytes/ml of blood. A. TWBC evolution for the LAG, ZFU and BOR breeds. B. TWBC evolution for the LAG, NDA and BAO breeds. The continuous lines are the average per breed and the surrounding areas represent the confidence intervals of the means at 95%.</p

Meaning and results on synthetic phenotypic variables.

<p>Meaning and results on synthetic phenotypic variables.</p

PCA analyses of synthetic variables.

<p>A. Correlation circle of the variables used for the PCA, projected on the first two components. B. Correlation circle of the variables used for the PCA, projected on the third and fourth components. PCV-related traits are presented in red, RBC in grey, Hb in orange, TWBC in blue and PA in black. The codes are explained in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0126498#pone.0126498.t001" target="_blank">Table 1</a>. C. Projection of individual coordinates on axes 1 and 2. D. Projection of individual coordinates on axes 3 and 4. Breed colours for LAG, BAO, NDA, BOR and ZFU are respectively black, orange, blue, green and red.</p