9 research outputs found
SI_Archive_S6
Full results of Orthofinder inferring orthologs between M. natalensis and D. melanogaster.
(OrthoFinder_OrthologousGroups_all_results_MNAT_DMEL.txt; Format: plain text)
Identified single copy orthologs (OrthoFinder) between M. natalensis and D. melanogaster.
(OrthoFinder_OrthologousGroups_single_copy_MNAT_DMEL.txt; Format: plain text
SI_Archive_S5
Complete raw read counts after HTSeq
(raw_counts.csv; Format: csv)
Complete normalized raw read counts after DESeq2
(normalized_counts_deseq2.csv; Format: csv
asm_TlongiContigsFB_IFB_Q_W-MIRA
The transcriptome of four T. longispinosus female castes was sequenced on an Illumina HiSeq 2000. After read trimming, caste specific contigs were assembled using the CLC software package. With these contigs as input a meta-assembly was conducted with MIRA to obtain the final contig set
SI_Archive_S9
Masked multiple sequence alignment for tree inference.
AGO1-3/Piwi/Aub set (ALICUT_ago1-3-piwi-aub.ginsi.vsm.fas; FASTA format
SI_Archive_S10
Checking Mnat_13309 to confirm identiy as Ago3 with M. bellicosus de novo data.
(1_checking_trin_mbel.txt; Format: plain text)
(2_trin_ago3_vs_dmel; Format: plain text)
(pfam_domains_ago3_contig.txt; Format: plain text)
(protocol.txt; Format: plain text)
(Trinity_contig.fa; FASTA-Format)
(workflow.docx; Format: MS Word
SI_Archive_S2
All Primers used for qRT-PCR
(Primers.txt; Format: plain text)
Transcriptome contigs used to find primers
(Contigs.fa; Format: fasta)
Expression Results of the qRT-PCR
(qRT-PCR.xlsx; Format: Excel-File
SI_Archive_S4
Multiple Sequence Alignment of all CO1 sequences (M. natalensis and M. bellicosus)
(co1_m_bell_m_nat.aligned.fas; FASTA format)
Distance Matrix (Kimura corrected)
(aligned.distmat; Format: plain text
SI_Archive_S1
File with 13,959 expressed genes after HTSeq
(mnat_only_expressed_genes.txt; Format: plain text