Base script used for simulations

Script written in Python used to do simulations of the hybrid zone. Requires simuPOP

saproPaperDryad2

This zipped file contains all the sequence data used in this study and all the scripts used for simulation

data

Contains (1) genotypic data for each of the five contact zones and (2) data used to estimate divergence history for (a) S. basiliscus / S. lewisi in IMa2 and (b) all other lineage-pairs in dad

Genotypes for Lampropholis coggeri

Has genotypes for all 11 loci assayed for all individuals in this study. Individuals are identified by easting & northing and by the population in which they are located

Transcriptome for Lampropholis coggeri

Assembled transcriptome for Lampropholis coggeri, the Northern lineage. The transcripts are annotated both with respect to (1) the known gene they match (if any) and (2) the UTR, CDS of the gene

Morphological dataset

Phenotypic measurements used to infer morphological evolutio

Concatenated alignment of exonic sequence data

Concatenated alignment (1195 loci) of exonic sequence data used to fit branch length on summary-coalescent species tre

exon capture phylogenomics, data and workflows (dryad_34274)

Data and computational workflows to accompany "Exon capture phylogenomics: efficacy across scales of divergence," by Jason Bragg, Sally Potter, Ke Bi and Craig Moritz

CTmax vs Tenv for calculating regression coeff.csv

Critical thermal maximum for rainforest sunskinks, and thermal variables for their collection sites.<br

Sampling localities for the 3N1 and 3N2 mitochondrial clones.

<p>Latitude/longitude data and sample sizes are given in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0000760#pone-0000760-t005" target="_blank">Table 5</a>. Ranges of the CA6, EA6, and SM6 sexual chromosome races are shown in light gray. The inset in the upper right shows the extent of the arid zone in dark gray.</p