CENP-A Is Dispensable for Mitotic Centromere Function after Initial Centromere/Kinetochore Assembly

Human centromeres are defined by chromatin containing the histone H3 variant CENP-A assembled onto repetitive alphoid DNA sequences. By inducing rapid, complete degradation of endogenous CENP-A, we now demonstrate that once the first steps of centromere assembly have been completed in G1/S, continued CENP-A binding is not required for maintaining kinetochore attachment to centromeres or for centromere function in the next mitosis. Degradation of CENP-A prior to kinetochore assembly is found to block deposition of CENP-C and CENP-N, but not CENP-T, thereby producing defective kinetochores and failure of chromosome segregation. Without the continuing presence of CENP-A, CENP-B binding to alphoid DNA sequences becomes essential to preserve anchoring of CENP-C and the kinetochore to each centromere. Thus, there is a reciprocal interdependency of CENP-A chromatin and the underlying repetitive centromere DNA sequences bound by CENP-B in the maintenance of human chromosome segregation

A Common Dataset for Genomic Analysis of Livestock Populations

Although common datasets are an important resource for the scientific community and can be used to address important questions, genomic datasets of a meaningful size have not generally been available in livestock species. We describe a pig dataset that PIC (a Genus company) has made available for comparing genomic prediction methods. We also describe genomic evaluation of the data using methods that PIC considers best practice for predicting and validating genomic breeding values, and we discuss the impact of data structure on accuracy. The dataset contains 3534 individuals with high-density genotypes, phenotypes, and estimated breeding values for five traits. Genomic breeding values were calculated using BayesB, with phenotypes and de-regressed breeding values, and using a single-step genomic BLUP approach that combines information from genotyped and un-genotyped animals. The genomic breeding value accuracy increased with increased trait heritability and with increased relationship between training and validation. In nearly all cases, BayesB using de-regressed breeding values outperformed the other approaches, but the single-step evaluation performed only slightly worse. This dataset was useful for comparing methods for genomic prediction using real data. Our results indicate that validation approaches accounting for relatedness between populations can correct for potential overestimation of genomic breeding value accuracies, with implications for genotyping strategies to carry out genomic selection programs

Swimming against the tide: a study of a neighbourhood trying to rediscover its ‘reason for being’– the case of South Bank, Redcar and Cleveland.

Many of the programmes and initiatives to regenerate deprived neighbourhoods appear to have had limited lasting impact. It has been argued that one reason for this is that we still have little real understanding of the nature and scale of the problems some communities face (Bernt, 2009). This article attempts to add to our knowledge through close study of an area with multiple problems and a history of failed regeneration attempts. An in-depth case study, undertaken to explore the current situation and future prospects of South Bank, a small neighbourhood in the North East of England, highlights transferable knowledge which may be applied to other regeneration areas. The analysis considers the nature and consequences of industrial decline; entrenched deprivation; the stigmatization of communities; the value of community consultation and the potential impact of retail-led regeneration. We question whether negative stigma attached to places can be changed and we ask what the future may hold for deprived communities now that public sector funding has largely dried up, and we consider an alternative approach: the potential impacts of private sector retail-led regeneration in the absence of public sector funding

Investigation of DC-8 nacelle modifications to reduce fan-compressor noise in airport communities. Part 4 - Flight acoustical and performance evaluations, for period May 1967 - October 1969

Flight acoustical and performance evaluations of DC 8 nacelle modifications to reduce fan-compressor noise in airport communitie

Assessment of alternative genotyping strategies to maximize imputation accuracy at minimal cost

BACKGROUND: Commercial breeding programs seek to maximise the rate of genetic gain while minimizing the costs of attaining that gain. Genomic information offers great potential to increase rates of genetic gain but it is expensive to generate. Low-cost genotyping strategies combined with genotype imputation offer dramatically reduced costs. However, both the costs and accuracy of imputation of these strategies are highly sensitive to several factors. The objective of this paper was to explore the cost and imputation accuracy of several alternative genotyping strategies in pedigreed populations. METHODS: Pedigree and genotype data from a commercial pig population were used. Several alternative genotyping strategies were explored. The strategies differed in the density of genotypes used for the ancestors and the individuals to be imputed. Parents, grandparents, and other relatives that were not descendants, were genotyped at high-density, low-density, or extremely low-density, and associated costs and imputation accuracies were evaluated. RESULTS: Imputation accuracy and cost were influenced by the alternative genotyping strategies. Given the mating ratios and the numbers of offspring produced by males and females, an optimized low-cost genotyping strategy for a commercial pig population could involve genotyping male parents at high-density, female parents at low-density (e.g. 3000 SNP), and selection candidates at very low-density (384 SNP). CONCLUSIONS: Among the selection candidates, 95.5 % and 93.5 % of the genotype variation contained in the high-density SNP panels were recovered using a genotyping strategy that costs respectively, $24.74 and$20.58 per candidate

Harmonic and power balance tools for tapping-mode atomic force microscope

The atomic force microscope(AFM) is a powerful tool for investigating surfaces at atomic scales. Harmonic balance and power balance techniques are introduced to analyze the tapping-mode dynamics of the atomic force microscope. The harmonic balance perspective explains observations hitherto unexplained in the AFM literature. A nonconservative model for the cantilever–sample interaction is developed. The energy dissipation in the sample is studied and the resulting power balance equations combined with the harmonic balance equations are used to estimate the model parameters. Experimental results confirm that the harmonic and power balance tools can be used effectively to predict the behavior of the tapping cantilever

Maximal quantum yield of photosynthesis in the northwestern Sargasso Sea

The magnitude and variability of the maximal quantum yield of photosynthesis were examined in the northwestern Sargasso Sea in April 1985. Maximal quantum yield was calculated from light-limited photosynthetic rates and spectrally-weighted absorption coefficients. The absorption by total particulates collected on a glass fiber filter was partitioned into two components, one associated with living phytoplankton and one associated with other absorbing particles. Two types of maximal quantum yield were calculated: one from the absorption by total particulates and one from the absorption by the phytoplanktonic component alone. Maximal quantum yield calculated from absorption by total particulates was low [0.014 to 0.071 mol C (mol photons)–1] and decreased as the proportion of absorption due to the non phytoplanktonic particles increased. The phytoplanktonic maximal quantum yield was higher [0.033 to 0.102 mol C (mol photons)–1] and varied by a factor of two over a period of two weeks during and following a spring bloom. Use of the phytoplanktonic component of absorption to calculate maximal quantum yield allowed analysis of changes in maximal quantum yield as a function of changes in phytoplankton physiology rather than changes in the amount of absorption by particulate detritus. The pattern of variation in quantum yield was related to nitrogen flux; these data suggest that maximal quantum yield can be predicted from environmental conditions on a regional or seasonal basis

Next Generation Differential GPS Architecture

The United States Coast Guard is engaged in a project to re-capitalize Reference Station (RS) and Integrity Monitor (IM) equipment used in the Nationwide Differential Global Position System (NDGPS). The Coast Guard in partnership with industry is developing a new software application to run on an open architecture platform as a replacement for legacy equipment. Present commercially available off-the-shelf Differential Global Positioning System (DGPS) RS and IM equipment lacks the open architecture required to support long term goals and future system improvements. The utility of the proposed new hardware architecture and software application is impressive - nearly every aspect of performance and supportability significantly exceeds that of the legacy architecture. The flexibility of the new hardware and software architectures complement each other to offer promising possibilities for the future. For example, the new hardware architecture uses Ethernet for internal and external site equipment communications. Each Local Area Network (LAN) will be equipped with a router and two 24 port switches. Various levels of password protection are provided to manage security both locally and remotely. While the new software application directly supports the legacy RS-232/422 interfaces to devices such as GPS receivers, a system design goal includes the ability to directly address each device from NCS. With the use of TCP/IP to RS-232/422 port server devices, the system can meet these forward reaching goals while supporting legacy equipment. New system capabilities include remote software management, remote hardware configuration management, and flexible options for management of licenses. The new configurable RS and IM architecture is a PCbased emulation of legacy reference station and integrity monitor equipment. It supports fluid growth and exploitation of new signals, formats, and technology as they become available, while remaining backward compatible with legacy architecture and user equipment. Examples of new capabilities include enhanced data management & anomaly analysis, universal On Change Reference Station Integrity Monitor (RSIM) message scheduling, improved satellite clock handling, additional observation interval modes, and Range Rate Correction monitoring in the IM. Engineering initiatives under development such as implementation of pre-broadcast integrity are also presented. This paper details challenges and goals that drove software and hardware design approaches destined to become the backbone of the Next Generation Differential GPS Architecture. Functional differences between legacy and next generation operation are explored. The new DGPS system architecture will allow the USCG radiobeacon system to continue to deliver and improve navigation and positioning services to our nation and its territories. Reprinted with permission from The Institute of Navigation (http://ion.org/) and The Proceedings of the 18th International Technical Meeting of the Satellite Division of The Institute of Navigation, (pp. 816-826). Fairfax, VA: The Institute of Navigation

Measurement of the Solar Neutrino Capture Rate by the Russian-American Gallium Solar Neutrino Experiment During One Half of the 22-Year Cycle of Solar Activity

We present the results of measurements of the solar neutrino capture rate in gallium metal by the Russian-American Gallium Experiment SAGE during slightly more than half of a 22-year cycle of solar activity. Combined analysis of the data of 92 runs during the 12-year period January 1990 through December 2001 gives a capture rate of solar neutrinos with energy more than 233 keV of 70.8 +5.3/-5.2 (stat.) +3.7/-3.2 (syst.) SNU. This represents only slightly more than half of the predicted standard solar model rate of 128 SNU. We give the results of new runs beginning in April 1998 and the results of combined analysis of all runs since 1990 during yearly, monthly, and bimonthly periods. Using a simple analysis of the SAGE results combined with those from all other solar neutrino experiments, we estimate the electron neutrino pp flux that reaches the Earth to be (4.6 +/- 1.1) E10/(cm^2-s). Assuming that neutrinos oscillate to active flavors the pp neutrino flux emitted in the solar fusion reaction is approximately (7.7 +/- 1.8) E10/(cm^2-s), in agreement with the standard solar model calculation of (5.95 +/- 0.06) E10/(cm^2-s).Comment: English translation of article submitted to Russian journal Zh. Eksp. Teor. Fiz. (JETP); 12 pages, 5 figures. V2: Added winter-summer difference and 2 reference