A descriptive catalog of the Mollusca of Utah

journal articleIn the preparation of this bulletin an effort has been made to bring together what was previously known of recent Utah mollusks and to incorporate with this the results of the authors' special studies. The form of presentation has been determined by the fact that, in the first place, the paper is intended to serve as a basis for further scientific work and, in the second place, to serve as a reference text for teachers of zoology in Utah colleges and high schools and as an aid to amateur collectors. The article is based primarily upon a study of upward of one thousand sets of shells collected during the year 1927 and a lesser number collected during 1928, all of which are now deposited in the Zoological Museum o.f the University of Utah

Potato Cultivar Differences Associated with Mealiness

Russet Burbank, Norchip, Pontiac, and LaSoda potato cultivars were examined for the parameters mealy and waxy. Russet Burbank was judged dry, hard and particulate, typifying mealiness. Using phase contrast microscopy and scanning electron microscopy, raw mealy cells were determined to be larger and more irregularly shaped than cells from waxy cultivars. Mealy cooked cells were engorged with gelatinized starch, cell walls were more polarized, and cell shapes were better retained after mashing, when compared to waxy cells. NMR-T2 bound water readings from Russet Burbank and Pontiac samples did not differ from each other. Starch granule sizes and shapes varied by cultivar

In Solidarity

This edition of Next Page is a departure from our usual question and answer format with a featured campus reader. Instead, we asked speakers who participated in the College’s recent Student Solidarity Rally (March 1, 2017) to recommend readings that might further our understanding of the topics on which they spoke

Analysis of transitions at two-fold redundant sites in mammalian genomes. Transition redundant approach-to-equilibrium (TREx) distance metrics

BACKGROUND: The exchange of nucleotides at synonymous sites in a gene encoding a protein is believed to have little impact on the fitness of a host organism. This should be especially true for synonymous transitions, where a pyrimidine nucleotide is replaced by another pyrimidine, or a purine is replaced by another purine. This suggests that transition redundant exchange (TREx) processes at the third position of conserved two-fold codon systems might offer the best approximation for a neutral molecular clock, serving to examine, within coding regions, theories that require neutrality, determine whether transition rate constants differ within genes in a single lineage, and correlate dates of events recorded in genomes with dates in the geological and paleontological records. To date, TREx analysis of the yeast genome has recognized correlated duplications that established a new metabolic strategies in fungi, and supported analyses of functional change in aromatases in pigs. TREx dating has limitations, however. Multiple transitions at synonymous sites may cause equilibration and loss of information. Further, to be useful to correlate events in the genomic record, different genes within a genome must suffer transitions at similar rates. RESULTS: A formalism to analyze divergence at two fold redundant codon systems is presented. This formalism exploits two-state approach-to-equilibrium kinetics from chemistry. This formalism captures, in a single equation, the possibility of multiple substitutions at individual sites, avoiding any need to "correct" for these. The formalism also connects specific rate constants for transitions to specific approximations in an underlying evolutionary model, including assumptions that transition rate constants are invariant at different sites, in different genes, in different lineages, and at different times. Therefore, the formalism supports analyses that evaluate these approximations. Transitions at synonymous sites within two-fold redundant coding systems were examined in the mouse, rat, and human genomes. The key metric (f(2)), the fraction of those sites that holds the same nucleotide, was measured for putative ortholog pairs. A transition redundant exchange (TREx) distance was calculated from f(2 )for these pairs. Pyrimidine-pyrimidine transitions at these sites occur approximately 14% faster than purine-purine transitions in various lineages. Transition rate constants were similar in different genes within the same lineages; within a set of orthologs, the f(2 )distribution is only modest overdispersed. No correlation between disparity and overdispersion is observed. In rodents, evidence was found for greater conservation of TREx sites in genes on the X chromosome, accounting for a small part of the overdispersion, however. CONCLUSION: The TREx metric is useful to analyze the history of transition rate constants within these mammals over the past 100 million years. The TREx metric estimates the extent to which silent nucleotide substitutions accumulate in different genes, on different chromosomes, with different compositions, in different lineages, and at different times

Panel options for large precision radio telescopes

The Cornell Caltech Atacama Telescope (CCAT) is a 25 m diameter telescope that will operate at wavelengths as short as 200 microns. CCAT will have active surface control to correct for gravitational and thermal distortions in the reflector support structure. The accuracy and stability of the reflector panels are critical to meeting the 10 micron HWFE (half wave front error) for the whole system. A system analysis based upon a versatile generic panel design has been developed and applied to numerous possible panel configurations. The error analysis includes the manufacturing errors plus the distortions from gravity, wind and thermal environment. The system performance as a function of panel size and construction material is presented. A compound panel approach is also described in which the reflecting surface is provided by tiles mounted on thermally stable and stiff sub-frames. This approach separates the function of providing an accurate reflecting surface from the requirement for a stable structure that is attached to the reflector support structure on three computer controlled actuators. The analysis indicates that there are several compound panel configurations that will easily meet the stringent CCAT requirements

IRC+10216's Innermost Envelope -- The eSMA's View

We used the Extended Submillimeter Array (eSMA) in its most extended configuration to investigate the innermost (within a radius of 290 R* from the star) circumstellar envelope (CSE) of IRC+10216. We imaged the CSE using HCN and other molecular lines with a beam size of 0."22 x 0."46, deeply into the very inner edge (15 R*) of the envelope where the expansion velocity is only 3 km/s. The excitation mechanism of hot HCN and KCl maser lines is discussed. HCN maser components are spatially resolved for the first time on an astronomical object. We identified two discrete regions in the envelope: a region with a radius of . 15 R*, where molecular species have just formed and the gas has begun to be accelerated (region I) and a shell region (region II) with a radius of 23 R* and a thickness of 15 R*, whose expansion velocity has reached up to 13 km/s, nearly the terminal velocity of 15 km/s. The Si$^{34}$S line detected in region I shows a large expansion velocity of 16 km/s due to strong wing components, indicating that the emission may arise from a shock region in the innermost envelope. In region II, the P.A. of the most copious mass loss direction was found to be 120 +/- 10 degrees, which may correspond to the equatorial direction of the star. Region II contains a torus-like feature. These two regions may have emerged due to significant differences in the size distributions of the dust particles in the two regions.Comment: 26 pages, 8 figures, accepted for publication in The Astrophysical Journal. Please find the pdf at http://www.submm.caltech.edu/~hs/astroph/0904.0280.pdf and the ps file at http://www.submm.caltech.edu/~hs/astroph/0904.0280.p

To Publish or Perish: What Faculty Need to Know About Scholarly Activity

This session will feature a panel presentation to include Counselor Education and Family Studies leadership, published faculty, and counseling journal editorial board members. The topic will be on the expectations for faculty and tips for successful (unsuccessful) manuscript submission

Detection of CI in absorption towards PKS 1830-211 with the eSMA

We report the first science observations and results obtained with the "extended" SMA (eSMA), which is composed of the SMA (Submillimeter Array), JCMT (James Clerk Maxwell Telescope) and CSO (Caltech Submillimeter Observatory). Redshifted absorptions at z=0.886 of CI (^3P_1 - ^3P_0) were observed with the eSMA with an angular resolution of 0.55"x0.22" at 1.1 mm toward the southwestern image of the remarkable lensed quasar PKS 1830-211, but not toward the northeastern component at a separation of ~1". Additionally, SMA observations of CO, 13CO and C18O (all J=4-3) were obtained toward this object: CO was also detected toward the SW component, but none of the isotopologues were. This is the first time [CI] is detected in this object, allowing the first direct determination of relative abundances of neutral atomic carbon to CO in the molecular clouds of a spiral galaxy at z>0.1. The [CI] and CO profiles can be decomposed into two and three velocity components respectively. We derive C/CO column density ratios ranging from <0.5 (representative of dense cores) to ~2.5 (close to translucent clouds values). This could indicate that we are seeing environments with different physical conditions or that we are witnessing chemical evolution of regions where C has not completely been converted into CO.Comment: 6 pages using emulateapj, 3 tables, 2 figures ; accepted for publication in ApJ