4 research outputs found
GP_513NeutralSNP_wild_turbot
Genepop input file created by Populations. Only markers included in neutral dataset (513 markers). Location codes are shown in Table 1 of the manuscript
GP_755SNP_wild_turbot
Genepop input file created by Populations including all the locations and markers used in the study (755 markers). Location codes are shown in Table 1 of the manuscript
Description of the files deposited in Dryad Prado et al 2018
Description of the files deposited in Dryad Prado et al 2018 "Parallel evolution and adaptation to environmental factors in a marine flatfish: implications for fisheries and aquaculture management of the turbot (Scophthalmus maximus)
Selected examples of the ability to differentiate between catfish allelic variants and gene duplicates (paralogues) using both blue catfish and channel catfish sequences
<p><b>Copyright information:</b></p><p>Taken from "Towards the ictalurid catfish transcriptome: generation and analysis of 31,215 catfish ESTs"</p><p>http://www.biomedcentral.com/1471-2164/8/177</p><p>BMC Genomics 2007;8():177-177.</p><p>Published online 18 Jun 2007</p><p>PMCID:PMC1906771.</p><p></p> Highly similar channel catfish sequences (Channel) and at least one blue catfish sequence (Blue) sharing the same BLAST identity were subjected to phylogenetic analysis. The topological stability of the neighbor joining trees was evaluated by 1000 bootstrapping replications, and the bootstrapping values are indicated by numbers at the nodes. Channel catfish and blue catfish genes placed into the same clade indicate that the additional, related channel catfish sequence is likely a paralogue rather than an allelic variant