Solar Atmospheric Oscillations and the Chromospheric Magnetic Topology

We investigate the oscillatory properties of the quiet solar chromosphere in relation to the underlying photosphere, with particular regard to the effects of the magnetic topology. We perform a Fourier analysis on a sequence of line-of-sight velocities measured simultaneously in a photospheric (Fe I 709.0 nm) and a chromospheric line (Ca II 854.2 nm). The velocities were obtained from full spectroscopic data acquired at high spatial resolution with the Interferometric BIdimensional Spectrometer (IBIS). The field of view encompasses a full supergranular cell, allowing us to discriminate between areas with different magnetic characteristics. We show that waves with frequencies above the acoustic cut-off propagate from the photosphere to upper layers only in restricted areas of the quiet Sun. A large fraction of the quiet chromosphere is in fact occupied by ``magnetic shadows'', surrounding network regions, that we identify as originating from fibril-like structures observed in the core intensity of the Ca II line. We show that a large fraction of the chromospheric acoustic power at frequencies below the acoustic cut-off, residing in the proximity of the magnetic network elements, directly propagates from the underlying photosphere. This supports recent results arguing that network magnetic elements can channel low-frequency photospheric oscillations into the chromosphere, thus providing a way to input mechanical energy in the upper layers.Comment: 4 pages, 3 figure, A&A Letters in pres

Radiative transfer effects on Doppler measurements as sources of surface effects in sunspot seismology

We show that the use of Doppler shifts of Zeeman sensitive spectral lines to observe wavesn in sunspots is subject to measurement specific phase shifts arising from, (i) altered height range of spectral line formation and the propagating character of p mode waves in penumbrae, and (ii) Zeeman broadening and splitting. We also show that these phase shifts depend on wave frequencies, strengths and line of sight inclination of magnetic field, and the polarization state used for Doppler measurements. We discuss how these phase shifts could contribute to local helioseismic measurements of 'surface effects' in sunspot seismology.Comment: 12 pages, 4 figures, Accepted for publication in the Astrophysical Journal Letter

Genome-wide analysis of LTR retrotransposon diversity and its impact on the evolution of the genus Helianthus (L.)

Background: Genome divergence by mobile elements activity and recombination is a continuous process that plays a key role in the evolution of species. Nevertheless, knowledge on retrotransposon-related variability among species belonging to the same genus is still limited. Considering the importance of the genus Helianthus, a model system for studying the ecological genetics of speciation and adaptation, we performed a comparative analysis of the repetitive genome fraction across ten species and one subspecies of sunflower, focusing on long terminal repeat retrotransposons at superfamily, lineage and sublineage levels. Results: After determining the relative genome size of each species, genomic DNA was isolated and subjected to Illumina sequencing. Then, different assembling and clustering approaches allowed exploring the repetitive component of all genomes. On average, repetitive DNA in Helianthus species represented more than 75% of the genome, being composed mostly by long terminal repeat retrotransposons. Also, the prevalence of Gypsy over Copia superfamily was observed and, among lineages, Chromovirus was by far the most represented. Although nearly all the same sublineages are present in all species, we found considerable variability in the abundance of diverse retrotransposon lineages and sublineages, especially between annual and perennial species. Conclusions: This large variability should indicate that different events of amplification or loss related to these elements occurred following species separation and should have been involved in species differentiation. Our data allowed us inferring on the extent of interspecific repetitive DNA variation related to LTR-RE abundance, investigating the relationship between changes of LTR-RE abundance and the evolution of the genus, and determining the degree of coevolution of different LTR-RE lineages or sublineages between and within species. Moreover, the data suggested that LTR-RE abundance in a species was affected by the annual or perennial habit of that species

The impact of failures and successes on affect and self-esteem in young and older adults

Little is known about the impact of success and failure events on age-related changes in affect states and, particularly, in self-esteem levels. To fill this gap in the literature, in the present study changes in affect and self-esteem in 100 young (19 - 30 years) and 102 older adults (65-81 years) were assessed after participants experienced success and failure in a demanding cognitive task. Overall, the success-failure manipulation induced changes on affect states and on state self-esteem, not on trait self-esteem. Regarding age differences, older and young adults were affected to the same extent by experiences of successes and failures. Theoretical considerations of the empirical findings are provided in the general discussion

Specific LTR-Retrotransposons Show Copy Number Variations between Wild and Cultivated Sunflowers

The relationship between variation of the repetitive component of the genome and domestication in plant species is not fully understood. In previous work, variations in the abundance and proximity to genes of long terminal repeats (LTR)-retrotransposons of sunflower (Helianthus annuus L.) were investigated by Illumina DNA sequencingtocompare cultivars and wild accessions. In this study, we annotated and characterized 22 specific retrotransposon families whose abundance varies between domesticated and wild genotypes. These families mostly belonged to the Chromovirus lineage of the Gypsy superfamily and were distributed overall chromosomes. They were also analyzed in respect to their proximity to genes. Genes close to retrotransposon were classified according to biochemical pathways, and differences between domesticated and wild genotypes are shown. These data suggest that structural variations related to retrotransposons might have occurred to produce phenotypic variation between wild and domesticated genotypes, possibly by affecting the expression of genes that lie close to inserted or deleted retrotransposons and belong to specific biochemical pathways as those involved in plant stress responses

Comparative genome-wide analysis of repetitive DNA in the genus Populus L.

Genome skimming was performed, using Illumina sequence reads, in order to obtain a detailed comparative picture of the repetitive component of the genome of Populus species. Read sets of seven Populus and two Salix species (as outgroups) were subjected to clustering using RepeatExplorer (Novák et al. BMC Bioinformatics 11:378 2010). The repetitive portion of the genome ranged from 33.8 in Populus nigra to 46.5% in Populus tremuloides. The large majority of repetitive sequences were long terminal repeat-retrotransposons. Gypsy elements were over-represented compared to Copia ones, with a mean ratio Gypsy to Copia of 6.7:1. Satellite DNAs showed a mean genome proportion of 2.2%. DNA transposons and ribosomal DNA showed genome proportions of 1.8 and 1.9%, respectively. The other repeat types accounted for less of 1% each. Long terminal repeat-retrotransposons were further characterized, identifying the lineage to which they belong and studying the proliferation times of each lineage in the different species. The most abundant lineage was Athila, which showed large differences among species. Concerning Copia lineages, similar transpositional profiles were observed among all the analysed species; by contrast, differences in transpositional peaks of Gypsy lineages were found. The genome proportions of repeats were compared in the seven species, and a phylogenetic tree was built, showing species separation according to the botanical section to which the species belongs, although significant differences could be found within sections, possibly related to the different geographical origin of the species. Overall, the data indicate that the repetitive component of the genome in the poplar genus is still rapidly evolving

Seeing-Induced Errors in Solar Doppler Velocity Measurements

Imaging systems based on a narrow-band tunable filter are used to obtain Doppler velocity maps of solar features. These velocity maps are created by taking the difference between the blue- and red-wing intensity images of a chosen spectral line. This method has the inherent assumption that these two images are obtained under identical conditions. With the dynamical nature of the solar features as well as the Earth's atmosphere, systematic errors can be introduced in such measurements. In this paper, a quantitative estimate of the errors introduced due to variable seeing conditions for ground-based observations is simulated and compared with real observational data for identifying their reliability. It is shown, under such conditions, that there is a strong cross-talk from the total intensity to the velocity estimates. These spurious velocities are larger in magnitude for the umbral regions compared to the penumbra or quiet-sun regions surrounding the sunspots. The variable seeing can induce spurious velocities up to about 1 km/s It is also shown that adaptive optics, in general, helps in minimising this effect.Comment: 14 page

Variation in the diet of the red fox in a Mediterranean area

Le régime alimentaire du Renard Vulpes vulpes a été étudié dans la province de Pise, en Italie centrale, par l'analyse de fèces (N = 1261; recueillies chaque mois pendant un an dans neuf zones) et de contenus du tube digestif (N = 330; collectés de janvier à mai dans toute la province). Ce régime est très varié, dominé par les vertébrés (notamment les mammifères) et les végétaux (en particulier les fruits), les invertébrés n'étant que peu abondants. Les aliments d'origine anthropique comptent pour à peu près la moitié du régime. En fin d'hiver et au printemps, les femelles consomment plus de petits mammifères et d'invertébrés que les mâles, les jeunes ayant un régime semblable à celui des adultes. Aucune relation n'a été trouvée entre l'adiposité et la taille corporelle des individus et le volume d'un quelconque item alimentaire. La variation saisonnière est importante pour la plupart des catégories d'aliments, les vertébrés tendant à être principalement consommés en hiver et au printemps, les fruits en été et en automne et les invertébrés surtout en été. Plusieurs de ces tendances s'expliquent par les disponibilités alimentaires mais les petits mammifères apparaissent moins consommés quand ils sont apparemment le plus abondants. Globalement, le régime est homogène dans les zones rurales et s'avère fort différent de celui observé dans les zones soumises à faible emprise humaine. Sur l'ensemble de la province, les différences se limitent à trois items d'origine humaine. Les herbes et autres végétaux contenus dans les estomacs et les intestins sont de manière significative associés à la consommation d'invertébrés mais pas à la présence de vers parasites dans les intestins. La forte consommation de fruits et d'aliments d'origine anthropique est un trait caractéristique du régime du renard dans cette région, et dans d'autres, de l'Italie. Les fruits pourraient être des aliments de complément alors que les petits mammifères seraient des aliments-clés. Les renards mangent plus de fruits quand et où leur densité de population est la plus forte. Les raisons de ces tendances sont discutées

Phospho-Specific Flow Cytometry Reveals Signaling Heterogeneity in T-Cell Acute Lymphoblastic Leukemia Cell Lines

Several signaling pathways are aberrantly activated in T-ALL due to genetic alterations of their components and in response to external microenvironmental cues. To functionally characterize elements of the signaling network in T-ALL, here we analyzed ten signaling proteins that are frequently altered in T-ALL -namely Akt, Erk1/2, JNK, Lck, NF-κB p65, p38, STAT3, STAT5, ZAP70, Rb- in Jurkat, CEM and MOLT4 cell lines, using phospho-specific flow cytometry. Phosphorylation statuses of signaling proteins were measured in the basal condition or under modulation with H2O2, PMA, CXCL12 or IL7. Signaling profiles are characterized by a high variability across the analyzed T-ALL cell lines. Hierarchical clustering analysis documents that higher intrinsic phosphorylation of Erk1/2, Lck, ZAP70, and Akt, together with ZAP70 phosphorylation induced by H2O2, identifies Jurkat cells. In contrast, CEM are characterized by higher intrinsic phosphorylation of JNK and Rb and higher responsiveness of Akt to external stimuli. MOLT4 cells are characterized by higher basal STAT3 phosphorylation. These data document that phospho-specific flow cytometry reveals a high variability in intrinsic as well as modulated signaling networks across different T-ALL cell lines. Characterizing signaling network profiles across individual leukemia could provide the basis to identify molecular targets for personalized T-ALL therapy