mtDNA-CO1 Arlequin Input File

mtDNA-CO1 input file for Arlequin Analysi

Microsatellite, AFLP and Hybrid index data

-Table with individual genotypification for 3 Color pattern (Sb,Kw,Yb) loci and 14 Microsatellite Loci. For a total 14 populations and 478 individuals. -Table with individual genotypification for 562 AFLP loci. For a total of 14 populations and 169 individuals. -Genoypic and Phenotypic Hybrid Index. For 107 individualas from the contact zone

AFLP structure input file

AFLP input file for STRUCTURE analysi

Arlequin AFLP input file

AFLP data: Input file for Arlequin analysi

AriasCetal2014CO1alignment

AriasCetal2014CO1alignmen

CO1 Beast Tree File

mtDNA-CO1 Trees File: a subset of 1001trees from Beast analysi

FileS2_Aln&Trees

Alignments and trees for the nucleic acid sensing TLRs from bats and other mammalian sequences in Fasta and Newick format

FileS3_PAML

Complete PAML results (in mlc files for the M1/M2, M8a/M8 and BSA test

Molecular Epidemiology of Influenza A/H3N2 Viruses Circulating in Mexico from 2003 to 2012

<div><p>In this work, nineteen influenza A/H3N2 viruses isolated in Mexico between 2003 and 2012 were studied. Our findings show that different human A/H3N2 viral lineages co-circulate within a same season and can also persist locally in between different influenza seasons, increasing the chance for genetic reassortment events. A novel minor cluster was also identified, named here as Korea, that circulated worldwide during 2003. Frequently, phylogenetic characterization did not correlate with the determined antigenic identity, supporting the need for the use of molecular evolutionary tools additionally to antigenic data for the surveillance and characterization of viral diversity during each flu season. This work represents the first long-term molecular epidemiology study of influenza A/H3N2 viruses in Mexico based on the complete genomic sequences and contributes to the monitoring of evolutionary trends of A/H3N2 influenza viruses within North and Central America.</p></div

Phylogenetic analysis based on the coding sequence of the HA gene of 19 samples isolated in Mexico from 2003 to 2012.

<p>The tree was built using the ML criteria with a background of 758 selected human A/H3N2 influenza viruses from North America. Support values were determined by aLRT and only values ≥0.70 are shown for significant nodes. The tree is mid-point rooted for purposes of clarity, and all horizontal branches are drawn to scale. Different coloring in branches indicate seasonality, as established by virus collection dates (from January to June, and from July to December, respectively). Viruses from before the 2002–2003 season are shown black. The position of the Mexican isolates in the tree is indicated by coding letters, as depicted in the left portion of figure.</p