AFLPs Raw Data

AFLPs Raw data matrix. This data were obtained from the presence or absence of band in the polyacrylamide gels. 111 isolates were includes and 57 band were scored. These data were implemented to generate the distance tree and the Minimum Spanning Network using SplitsTree version 4.12.3 and BioNumerics software (version 7.1) respectively

VNTR Raw data

This file contains the numbers of the repeats obtained from the sequenced VNTR loci. These data were implemented to generated the Minimum Spanning Network using BioNumerics software (version 7.1

VNTR Structure project

This file contains the STRUCTURE project generated using the repeats of the sequenced VNTRs. Xam isolates were assigned into genetic populations using a clustering algorithm based on Bayesian model in STRUCTURE 2.3.3 without prior population information. Genetic clusters of the isolates were generated with independent allele frequencies and five thousand replicates during burning period and 100.000 Monte Carlo Markov chain (MCMC) iteration

NJ_VNTR_bootstrap_llanos_Xam

VNTR data were used to created an unrooted distance tree with the Neighbor-Joining algorithm in SplitsTree version 4.12.3. One thousand bootstrap replicates were run

AFLP Structure Project

This file contains the STRUCTURE project generated using the AFLP data. Xam isolates were assigned into genetic populations using a clustering algorithm based on Bayesian model in STRUCTURE 2.3.3 without prior population information. Genetic clusters of the isolates were generated with independent allele frequencies and five thousand replicates during burning period and 100.000 Monte Carlo Markov chain (MCMC) iterations

NJ_AFLP_bootstrap_llanos_Xam

Unrooted distance tree with the Neighbor-Joining algorithm was generated in SplitsTree version 4.12.3. Branch supports were determined running 1000 bootstrap replicates

Matrix_VNTR_llanos_Xam

Matrix generated by presence or absence of an allele in a specific VNTR locus. In total 5 VNTR loci were used. The allele number for each locus is variable and those are described in the table 1 of the manuscript