El Diario de Pontevedra : periódico liberal: Ano XXXIII Número 9797 - 1916 decembro 14

<p>Sequence divergence of 79 variable noncoding loci (>150 bp) from 11 chloroplast genomes of <i>Schima</i>, with one of the invert repeat regions removed.</p

Gene map of <i>Schima superba</i> chloroplast genome.

<p>Gene map of <i>Schima superba</i> chloroplast genome.</p

Percentage of variation in 79 variable noncoding regions of the 11 <i>Schima</i> chloroplast genomes.

<p>These regions are oriented according to their locations in the genome.</p

Location of SSR loci within the 11 <i>Schima</i> genomes.

<p>Location of SSR loci within the 11 <i>Schima</i> genomes.</p

mVISTA percent identity plot comparison among the chloroplast genomes with <i>S</i>. <i>sinensis</i> as a reference.

<p>mVISTA percent identity plot comparison among the chloroplast genomes with <i>S</i>. <i>sinensis</i> as a reference.</p

Comparisons of the border regions among the chloroplast genomes of 11 <i>Schima</i> species.

<p><i>ycf1</i>^* (<i>ycf1</i>_like) and <i>rps19</i>^* (<i>rps19</i>_like) represent the incomplete duplication of the gene within the IR region.</p

List of taxa sampled in this study, with the voucher, chloroplast genome size, Illumina reads and coverage depth information.

<p>List of taxa sampled in this study, with the voucher, chloroplast genome size, Illumina reads and coverage depth information.</p

Phylogenetic relationships among the 11 <i>Schima</i> species.

<p>The phylogenetic tree was reconstructed using the whole chloroplast genome data set minus a copy of the IR region. Numbers above the branches show bootstrap support values that are above 80%.</p

Figure S2

Per-site likelihoods calculated from ML trees based on the 13-gene region alignment (4 mtDNA genes excluded) of Soltis et al. (2011). Values above 0 are sites that support Amborella sister to angiosperms, and values below 0 support Amborella sister to Nymphaeales

Supplemental data; alignments & trees

Supplemental data; alignments & tree