R code for sPCA, DAPC, and Mantel tests

This file contains the R script used for DAPC, sPCA, and Mantel test analyses. Input files are contained in the input files zip archive separately available on Dryad

FSC2 input files

This zip archive contains all necessary input to run FastSimCoal2 analyses performed. See the included readme file in the zip archive for further details

Infile for SGoF+ analysis

Input file for sequential goodness-of-fit test to correct for multiple comparisons implemented in SGoF+. The file consists of an integer indicating the total number of tests (102) and after it two columns with pairs of identifiers and p-values

All SDM points

This file contains latitude and longitude coordinates for the 91 unique localities used to construct species distribution models

Structure infile

This is the input file for Structure analyses. The second column contains sample group information used as a prior. Missing data are represented by -9

Alignment phylip format

MtDNA alignment in phylip format for PartitionFinder analysis

Geneland individual labels

This is the file of individual labels for Geneland analyses in the same order as the genotypes and coordinates files

MrBayesDir infile

Nexus file for modified version of MrBayes 3.1.2 with Dirichlet priors on branch lengths. Partitioning scheme and substitution models determined using PartitionFinder

Geneland coordinates

This is the spatial coordinate file (in UTM format) for Geneland analyses. There is one line per individual and two columns representing the x-axis and y-axis coordinate. Original latitude/longitude coordinates were collected in the field using a hand-held GPS (WGS84 datum) and subsequently converted to UTM format in ArcView

IBDWS infile for IBR regression

Matrixes of resistance distance (above diagonal) and genetic distance (below diagonal) for Isolation by Distance Web Service analysis. Genetic distances calculated as Fst/(1-Fst) in Genepop v4.2