Scripts for ABC analysis

Custom-made scripts used in the ABC analysis with ABCtoolbox/fastsimcoal

Input files for ABC analysis

Input files used for ABC analysis with ABCtoolbox/fastsimcoal

Summary statistics for ABC analysis

Text files containing summary statistics used in the ABC analysis

Sequence alignments

Fasta files containing alignments of all sequence loci

Scripts

Contains all the scripts used for data analysis in the paper

Supporting Figure S6

Supporting Figure S6: Distribution of nucleotide diversity (π, panel A), genealogical sorting index (gsi, panel B), depth of the lowest common ancestor of all four flycatcher species relative to the root depth (panel C), frequencies of all 15 possible rooted tree topologies (panel D), and topology diversity index (tdi, panel E) for all chromosomes

Supporting Table S1

Supporting Table S1: List of all flycatcher samples used in the study

Data Files

Contains input files for different species tree analyses and phylogenetic trees

Supporting Information_Tables S2-S4_Figures S1-S5

Contains Supporting Tables S2-S4 and Supporting Figures S1-S

All data

This folder contains the information related to the analyses as well as the important results and scripts. Folders are described in individual README within the subfolders