Gamma Limit for Transition Paths of Maximal Probability

Chemical reactions can be modelled via diffusion processes conditioned to make a transition between specified molecular configurations representing the state of the system before and after the chemical reaction. In particular the model of Brownian dynamics - gradient flow subject to additive noise - is frequently used. If the chemical reaction is specified to take place on a given time interval, then the most likely path taken by the system is a minimizer of the Onsager-Machlup functional. The Gamma limit of this functional is determined in the case where the temperature is small and the transition time scales as the inverse temperatur

Eigenfactor : Does the Principle of Repeated Improvement Result in Better Journal Impact Estimates than Raw Citation Counts?

Eigenfactor.org, a journal evaluation tool which uses an iterative algorithm to weight citations (similar to the PageRank algorithm used for Google) has been proposed as a more valid method for calculating the impact of journals. The purpose of this brief communication is to investigate whether the principle of repeated improvement provides different rankings of journals than does a simple unweighted citation count (the method used by ISI).Comment: bibliographic information correcte

Algorithms for Kullback-Leibler Approximation of Probability Measures in Infinite Dimensions

In this paper we study algorithms to find a Gaussian approximation to a target measure defined on a Hilbert space of functions; the target measure itself is defined via its density with respect to a reference Gaussian measure. We employ the Kullback-Leibler divergence as a distance and find the best Gaussian approximation by minimizing this distance. It then follows that the approximate Gaussian must be equivalent to the Gaussian reference measure, defining a natural function space setting for the underlying calculus of variations problem. We introduce a computational algorithm which is well-adapted to the required minimization, seeking to find the mean as a function, and parameterizing the covariance in two different ways: through low rank perturbations of the reference covariance; and through Schr\"odinger potential perturbations of the inverse reference covariance. Two applications are shown: to a nonlinear inverse problem in elliptic PDEs, and to a conditioned diffusion process. We also show how the Gaussian approximations we obtain may be used to produce improved pCN-MCMC methods which are not only well-adapted to the high-dimensional setting, but also behave well with respect to small observational noise (resp. small temperatures) in the inverse problem (resp. conditioned diffusion).Comment: 28 page