The Things in Heaven and Earth

The book examines and analyzes the content of John Ryder\u27s: The Things in Heaven and Earth: An Essay in Pragmatic Naturalism

Chicago Pragmatism and the Extended Mind Theory

The goal of this paper is twofold. First, it examines the pragmatic ramifications of recent research in certain areas of cognitive science (embodied mind theory, extended mind theory). Second, it shows how the Chicago pragmatists (George H. Mead, John Dewey) not only envisioned these findings but also how, within certain strains of cognitive science, their work is explicitly appreciated for important preliminary insights which help us interpret the outcomes of current research. The argumentative line of the paper revolves around Mead’s and Dewey’s treatment of the relation between perception and action. Cognition, in the view of the Chicago pragmatists, is not divisible into atomistic, ontologically disconnected units but rather should be seen as an organic circuit within which stimuli and responses are mutually interdependent phases of an ongoing goal-directed active involvement of the organism in the environmental structures. According to Mead and Dewey, as well as the presently burgeoning branch of cognitive science called the “extended mind theory,” cognition is not something that takes place exclusively in our heads but should be rather seen as an objective relation between organism and the environment. On the background of Mead’s theory of the act (with its four stages – impulse, perception, manipulation, and consummation) the author points to certain surprising similarities between the pragmatists’ treatment of the notion of cognition and ideas recently suggested by defenders of the extended mind theory

Historical significance and taxonomic status of Ischyrodon meriani (Pliosauridae) from the Middle Jurassic of Switzerland

Ischyrodon meriani is an obscure pliosaurid taxon established upon an exceptionally large tooth crown of a probable Callovian (Middle Jurassic) age that originates from Wölflinswil, Canton of Aargau, Switzerland. Despite being known for almost two centuries, the specimen remains poorly researched. Historically, I. meriani has been associated, or even considered conspecific, with Pliosaurus macromerus and Liopleurodon ferox. However, neither of the two hypotheses have been tested through detailed comparisons or using modern quantitative methods. Here, we redescribe the type of Ischyrodon meriani, illustrate it, and compare to teeth of thalassophonean pliosaurids, with special focus on Jurassic representatives of the clade. Multivariate analyses show close similarities to L. ferox but comparable structures to those of I. meriani, including a distinctive pattern of the apicobasal ridges, are also observable in some mid-Cretaceous brachauchenines from the ‘Polyptychodon’ assemblage of East and South East England. While it is likely that I. meriani represents a Liopleurodon-like taxon, or is indeed conspecific with L. ferox, which would make I. meriani the proper name for the species, any such taxonomic considerations are hindered by the fragmentary nature of the type specimens of both these taxa as well as limited knowledge of the dental variability within and between individual jaws of L. ferox. Currently, I. meriani is best treated as a nomen dubium. Finally, we discuss the potential implications of I. meriani being conspecific with L. ferox, and additionally provide a commentary on the taxonomic status of Liopleurodon

Microorganisms in the waste water biological treatment processes

Import 01/09/2009Tato bakalářská práce je zaměřena na přehled různych metod, které se používají při biologickém čištění odpadních vod a na mikroorganizmy které se při těchto procesech používají.V úvodní části jsou popsány biologické metody čištění odpadních vod, které jsou rozděleny podle nároku na kyslík, hlavně bakterií. V další části je popis bakterialní buňky ,její metabolizmus a způsob výživy. Jsou zde popsány určité druhy bakterií, které se používají v procesech biologického čištění a faktory ovlivňující jejích život.V poslední části jsou možné návrhy na zlepšení výkonnosti stávajících metod biologického čištěníThis bachelor work is focused to survey of various methods used at waste water biological treatment and microorganism used at these processes. Biological methods of treatment, divided according to pretension to oxygen, mainly bacterium, are described in introduction. Following part is description of bacterial cell, its metabolism and nutrition mode. Certain bacteria species used in biological treatment and factors that influence their life are described there. Last part includes possible motions for at present used biological treatment methods efficiency improvement.Prezenční546 - Institut environmentálního inženýrstvívelmi dobř

Non-coding stem-bulge RNAs are required for cell proliferation and embryonic development in C. elegans.

Stem bulge RNAs (sbRNAs) are a family of small non-coding stem-loop RNAs present in Caenorhabditis elegans and other nematodes, the function of which is unknown. Here, we report the first functional characterisation of nematode sbRNAs. We demonstrate that sbRNAs from a range of nematode species are able to reconstitute the initiation of chromosomal DNA replication in the presence of replication proteins in vitro, and that conserved nucleotide sequence motifs are essential for this function. By functionally inactivating sbRNAs with antisense morpholino oligonucleotides, we show that sbRNAs are required for S phase progression, early embryonic development and the viability of C. elegans in vivo. Thus, we demonstrate a new and essential role for sbRNAs during the early development of C. elegans. sbRNAs show limited nucleotide sequence similarity to vertebrate Y RNAs, which are also essential for the initiation of DNA replication. Our results therefore establish that the essential function of small non-coding stem-loop RNAs during DNA replication extends beyond vertebrates.This work was supported by the Biotechnology and Biological Sciences Research Council (BBSRC doctoral training grant DTG (BB/F016581/1) and grant BB/K013378/1).This is the final version of the article. It first appeared from The Company of Biologists via http://dx.doi.org/10.1242/jcs.166744

Co-transcriptional R-loops are the main cause of estrogen-induced DNA damage.

The hormone estrogen (E2) binds the estrogen receptor to promote transcription of E2-responsive genes in the breast and other tissues. E2 also has links to genomic instability, and elevated E2 levels are tied to breast cancer. Here, we show that E2 stimulation causes a rapid, global increase in the formation of R-loops, co-transcriptional RNA-DNA products, which in some instances have been linked to DNA damage. We show that E2-dependent R-loop formation and breast cancer rearrangements are highly enriched at E2-responsive genomic loci and that E2 induces DNA replication-dependent double-strand breaks (DSBs). Strikingly, many DSBs that accumulate in response to E2 are R-loop dependent. Thus, R-loops resulting from the E2 transcriptional response are a significant source of DNA damage. This work reveals a novel mechanism by which E2 stimulation leads to genomic instability and highlights how transcriptional programs play an important role in shaping the genomic landscape of DNA damage susceptibility

Evidence of two lineages of metriorhynchid crocodylomorphs in the Lower Cretaceous of the Czech Republic

Metriorhynchid crocodylomorphs were an important component in shallow marine ecosystems during the Middle Jurassic to Early Cretaceous in the European archipelago. While metriorhynchids are well known from western European countries, their central and eastern European record is poor and usually limited to isolated or fragmentary specimens which often hinders a precise taxonomic assignment. However, isolated elements such as tooth crowns, have been found to provide informative taxonomic identifications. Here we describe two isolated metriorhynchid tooth crowns from the upper Valanginian (Lower Cretaceous) of the Stramberk area, Czech Republic. Our assessment of the specimens, including multivariate analysis of dental measurements and surface enamel structures, indicates that the crowns belong to two distinct geosaurin taxa (Plesiosuchina? indet. and Torvoneustes? sp.) with different feeding adaptations. The specimens represent the first evidence of Metriorhynchidae from the Czech Republic and some of the youngest metriorhynchid specimens worldwide.Web of Science66236735

Sustained Acoustic Medicine Combined with A Diclofenac Ultrasound Coupling Patch for the Rapid Symptomatic Relief of Knee Osteoarthritis: Multi-Site Clinical Efficacy Study

Background: Sustained Acoustic Medicine (SAM) is an emerging, non-invasive, non-narcotic, home-use ultrasound therapy for the daily treatment of joint pain. The aim of this multi-site clinical study was to examine the efficacy of long-duration continuous ultrasound combined with a 1% diclofenac ultrasound gel patch in treating pain and improving function in patients with knee osteoarthritis. Methods: The Consolidated Standards of Reporting Trials (CONSORT) were followed. Thirty-two (32) patients (18-males, 14-females) 54 years of average age with moderate to severe knee pain and radiographically confirmed knee osteoarthritis (Kellgren-Lawrence (KL) grade II/III) were enrolled for treatment with the SAM device and diclofenac patch applied daily to the treated knee. SAM ultrasound (3 MHz, 0.132 W/cm2, 1.3 W) and 6 grams of 1% diclofenac were applied with a wearable device for 4 hours daily for 1 week, delivering 18,720 Joules of ultrasound energy per treatment. The primary outcome was the daily change in pain intensity using a numeric rating scale (NRS 0-10), which was assessed prior to intervention (baseline, day 1), before and after each daily treatment, and after 1 week of daily treatment (day 7). Rapid responders were classified as those patients exhibiting greater than a 1-point reduction in pain following the first treatment. Change in Western Ontario McMaster Osteoarthritis Questionnaire (WOMAC) score from baseline to day 7 was the secondary functional outcome measure. Additionally, a series of daily usability and user experience questions related to devising ease of use, functionality, safety, and effectiveness, were collected. Data were analyzed using t-tests and repeated measure ANOVAs. Results: The study had a 94% retention rate, and there were no adverse events or study-related complaints across 224 unique treatment sessions. Rapid responders included 75% of the study population. Patients exhibited a significant mean NRS pain reduction over the 7-day study of 2.06-points (50%) for all subjects (n=32, p Conclusion: Sustained Acoustic Medicine combined with 1% topical diclofenac rapidly reduced pain and improved function in patients with moderate to severe osteoarthritis-related knee pain. The clinical findings suggest that this treatment approach may be used as a conservative, non-invasive treatment option for patients with knee osteoarthritis. Additional research is warranted on non-weight bearing joints of the musculoskeletal system as well as different topical drugs that could benefit from improved localized delivery

The phylogenetic nomenclature of ornithischian dinosaurs

Ornithischians form a large clade of globally distributed Mesozoic dinosaurs, and represent one of their three major radiations. Throughout their evolutionary history, exceeding 134 million years, ornithischians evolved considerable morphological disparity, expressed especially through the cranial and osteodermal features of their most distinguishable representatives. The nearly two-century-long research history on ornithischians has resulted in the recognition of numerous diverse lineages, many of which have been named. Following the formative publications establishing the theoretical foundation of phylogenetic nomenclature throughout the 1980s and 1990s, many of the proposed names of ornithischian clades were provided with phylogenetic definitions. Some of these definitions have proven useful and have not been changed, beyond the way they were formulated, since their introduction. Some names, however, have multiple definitions, making their application ambiguous. Recent implementation of the International Code of Phylogenetic Nomenclature (ICPN, or PhyloCode) offers the opportunity to explore the utility of previously proposed definitions of established taxon names. Since the Articles of the ICPN are not to be applied retroactively, all phylogenetic definitions published prior to its implementation remain informal (and ineffective) in the light of the Code. Here, we revise the nomenclature of ornithischian dinosaur clades; we revisit 76 preexisting ornithischian clade names, review their recent and historical use, and formally establish their phylogenetic definitions. Additionally, we introduce five new clade names: two for robustly supported clades of later-diverging hadrosaurids and ceratopsians, one uniting heterodontosaurids and genasaurs, and two for clades of nodosaurids. Our study marks a key step towards a formal phylogenetic nomenclature of ornithischian dinosaurs. © 2021 Madzia et al