Geant4 Applications for Modeling Molecular Transport in Complex Vacuum Geometries

We discuss a novel use of the Geant4 simulation toolkit to model molecular transport in a vacuum environment, in the molecular flow regime. The Geant4 toolkit was originally developed by the high energy physics community to simulate the interactions of elementary particles within complex detector systems. Here its capabilities are utilized to model molecular vacuum transport in geometries where other techniques are impractical. The techniques are verified with an application representing a simple vacuum geometry that has been studied previously both analytically and by basic Monte Carlo simulation. We discuss the use of an application with a very complicated geometry, that of the Large Synoptic Survey Telescope camera cryostat, to determine probabilities of transport of contaminant molecules to optical surfaces where control of contamination is crucial.Comment: 7 pages, 4 figures, 2 tables, to appear in IJMSSC, updated to accepted versio

Localization of the Functional Domains of Human Tissue Inhibitor of Metalloproteinases-3 and the Effects of a Sorsby's Fundus Dystrophy Mutation

A transient COS-7 cell expression system was used to investigate the functional domain arrangement of tissue inhibitor of metalloproteinases-3 (TIMP-3), specifically to assess the contribution of the amino- and carboxylterminal domains of the molecule to its matrix metalloproteinase (MMP) inhibitory and extracellular matrix (ECM) binding properties. Wild type TIMP-3 was entirely localized to the ECM in both its glycosylated (27 kDa) and unglycosylated (24 kDa) forms. A COOH-terminally truncated TIMP-3 molecule was found to be a non- ECM bound MMP inhibitor, whereas a chimeric TIMP molecule, consisting of the NH2-terminal domain of TIMP-2 fused to the COOH-terminal domain of TIMP-3, displayed ECM binding, albeit with a lower affinity than the wild type TIMP-3 molecule. Thus the functional domain arrangement of TIMP-3 is analogous to that seen in TIMP-1 and -2, namely that the NH2-terminal domain is responsible for MMP inhibition whereas the COOH-terminal domain is most important in mediating the specific functions of the molecule. A mutant TIMP-3 in which serine 181 was changed to a cysteine, found in Sorsby’s fundus dystrophy, a hereditary macular degenerative disease, was also expressed in COS-7 cells. This gave rise to an additional 48-kDa species (possibly a TIMP-3 dimer) that retained its ability to inhibit MMPs and localize to the ECM. These data favor the hypothesis that the TIMP-3 mutations seen in Sorsby’s fundus dystrophy contribute to disease progression by accumulation of mutant protein rather than by the loss of functional TIMP-3

High hydrogen yield and purity from palm empty fruit bunch and pine pyrolysis oils

The benefits of CO 2 sorption enhanced steam reforming using calcined dolomite were demonstrated for the production of hydrogen from highly oxygenated pyrolysis oils of the agricultural waste palm empty fruit bunches (PEFB) and pine wood. At 1 atm in a down-flow packed bed reactor at 600 °C, the best molar steam to carbon ratios were between 2 and 3 using a Ni catalyst. After incorporating steam-activated calcined dolomite as the CO 2 sorbent in the reactor bed, the H 2 yield from the moisture free PEFB oil increased from 9.5 to 10.4 wt.% while that of the pine oil increased from 9.9 to 13.9 wt.%. The hydrogen purity also rose from 68 to 96% and from 54 to 87% for the PEFB and pine oils respectively, demonstrating very substantial sorption enhancement effects

The Ontological Basis of Strong Artificial Life

This article concerns the claim that it is possible to create living organisms, not merely models that represent organisms, simply by programming computers ("virtual" strong alife). I ask what sort of things these computer-generated organisms are supposed to be (where are they, and what are they made of?). I consider four possible answers to this question: (a) The organisms are abstract complexes of pure information; (b) they are material objects made of bits of computer hardware; (c) they are physical processes going on inside the computer; and (d) they are denizens of an entire artificial world, different from our own, that the programmer creates. I argue that (a) could not be right, that (c) collapses into (b), and that (d) would make strong alife either absurd or uninteresting. Thus, "virtual" strong alife amounts to the claim that, by programming a computer, one can literally bring bits of its hardware to life

Why does low intensity, long-day lighting promote growth in Petunia, Impatiens, and tomato?

Numerous reports demonstrate that low intensity, long-day (LD) lighting treatments can promote growth. However, there are conflicting suggestions as to the mechanisms involved. This study examines the responses of Petunia, Impatiens, and tomato to LD lighting treatments and concludes that no single mechanism can explain the growth promotion observed in each case. Petunia showed the most dramatic response to photoperiod; up to a doubling in dry weight (DW) as a result of increasing daylength from 8 h d–1 to 16 h d–1.This could be explained by an increase in specific leaf area (SLA) comparable to that seen with shading. At low photosynthetic photon flux densities (PPFD), the increased leaf area more than compensated for any loss in photosynthetic capacity per unit leaf area. In Petunia, the response may, in part, have also been due to changes in growth habit. Impatiens and tomato showed less dramatic increases in DW as a result of LD lighting, but no consistent effects on SLA or growth habit were observed. In tomato, increased growth was accompanied by increased chlorophyll content, but this had no significant effect on photosynthesis. In both species, increased growth may have been due to a direct effect of LD lighting on photosynthesis. This is contrary to the generally held view that light of approx. 3 – 4 μmol m–2 s–1 is unlikely to have any significant impact on net photosynthesis. Nevertheless, we show that the relationship between PPFD and net photosynthesis is non-linear at low light levels, and therefore low intensity LD lighting can offset respiration very efficiently. Furthermore, a small increase in photosynthesis will have a greater impact when ambient light levels are low

Predictions of angle dependent tortuosity and elasticity effects on sound propagation in cancellous bone

The anisotropic pore structure and elasticity of cancellous bone cause wave speeds and attenuation in cancellous bone to vary with angle. Previously published predictions of the variation in wave speed with angle are reviewed. Predictions that allow tortuosity to be angle dependent but assume isotropic elasticity compare well with available data on wave speeds at large angles but less well for small angles near the normal to the trabeculae. Claims for predictions that only include angle-dependence in elasticity are found to be misleading. Audio-frequency data obtained at audio-frequencies in air-filled bone replicas are used to derive an empirical expression for the angle-and porosity-dependence of tortuosity. Predictions that allow for either angle dependent tortuosity or angle dependent elasticity or both are compared with existing data for all angles and porosities

How the eyes affect the I: Gaze perception, cognition and the robot-human interface

A good deal of research has shown that humans are particularly sensitive to gaze direction. Indeed we may well have evolved neural mechanisms dedicated to the perception of the eyes and eye-gaze direction. As well as providing a very strong signal to our perceptual systems eye-gaze also produces a number of cognitive effects. This paper reviews a number of studies suggesting that both eye-gaze direction, and head orientation are processed automatically by our cognitive systems interfering with the processing of auditory directional information, triggering reflexive shifts of attention, influencing the information we extract from natural scenes and the performance of certain communicative tasks. Given the potential for social attention cues to influence aspects of cognitive activity, it would seem critical for designers to pay particular attention to the appearance and movement of the eyes and head in the creation of robot-human interfaces

Gaze perception: is seeing influenced by believing?

Gaze perception has been thought to be stimulus-driven. This view is challenged by a new demonstration that a gaze direction aftereffect can be influenced by beliefs about the gazer's ability to see

Spectrometer analysis of dyeing behavior of cotton and polyester fabric using direct, reactive, and dispersive dyes

Color is one the most significant factors for textile fabrics. In addition, color is very important for marketability of textile fabrics. Colorfastness refers to dyes that do not shift hue or fade when exposed to light and other environmental factors and that do not bleed onto other fabrics or materials during storage, processing, use, or care. This study focuses on the use of three different types of dye, disperse, reactive, and direct, on two most commonly used fabrics, cotton and polyester. The fabrics will go under testing to see how much dye is released into the wash by looking at the L, A, B values from the CIELAB spectrometer. The methods done in this study will conclude if the tested fabrics absorb the dyes, making the textiles marketable