Spatiotemporal expression of Pax genes in amphioxus: Insights into Pax-related organogenesis and evolution

The expression of four AmphiPax genes in 16 developmental stages and different organs in amphioxus (Branchiostoma belcheri) was investigated, finding those genes expressed throughout amphioxus life with temporal-specific (especially during embryogenesis and metamorphosis) and spatial-specific patterns. This study suggests that duplicated Pax genes in vertebrates might maintain most of their ancestral functions and also expand their expression patterns after the divergence of protochordates and vertebrates.National Natural Science Foundation of China [30830023]; National High Technology Research and Development Program of China [2008AA092602]; Specialized Research Fund for the Doctoral Program of Higher Education [20070384041

Transcriptional Regulation of opaR, qrr2–4 and aphA by the Master Quorum-Sensing Regulator OpaR in Vibrio parahaemolyticus

Background: Vibrio parahaemolyticus is a leading cause of infectious diarrhea and enterogastritis via the fecal-oral route. V. harveyi is a pathogen of fishes and invertebrates, and has been used as a model for quorum sensing (QS) studies. LuxR is the master QS regulator (MQSR) of V. harveyi, and LuxR-dependent expression of its own gene, qrr2–4 and aphA have been established in V. harveyi. Molecular regulation of target genes by the V. parahaemolyticus MQSR OpaR is still poorly understood. Methodology/Principal Findings: The bioinformatics analysis indicated that V. parahaemolyticus OpaR, V. harveyi LuxR, V. vulnificu SmcR, and V. alginolyticus ValR were extremely conserved, and that these four MQSRs appeared to recognize the same conserved cis-acting signals, which was represented by the consensus constructs manifesting as a position frequency matrix and as a 20 bp box, within their target promoters. The MQSR box-like sequences were found within the upstream DNA regions of opaR, qrr2–4 and aphA in V. parahaemolyticus, and the direct transcriptional regulation of these target genes by OpaR were further confirmed by multiple biochemical experiments including primer extension assay, gel mobility shift assay, and DNase I footprinting analysis. Translation and transcription starts, core promoter elements for sigma factor recognition, Shine-Dalgarno sequences for ribosome recognition, and OpaR-binding sites were determined for the five target genes of OpaR, which gave a structural map of the OpaR-dependent promoters. Further computational promote

Numerical Study of Random Corrosion Characteristics of Metal Based On the Cellular Automata Method

In the production process of coal chemical companies, the corrosion of metal equipment and the resulting shortening of its service life can cause safety hazards. Simulation modeling of pit emergence and development during corrosion evolution provides a new approach to corrosion research. By analyzing the effect of different parameters on causing corrosion to occur, it is possible to reflect the influence of complex physico-chemical systems. In this paper, the simulation of a meta-cellular automaton model of pit growth under diffusion and the introduction of a passivation probability to correct the chemical reaction rate are developed; The effect of reaction passivation probability, chemical reaction rate and diffusion coefficient on the degree of corrosion was also analyzed by means of quantitative analysis. The results show that for metal corrosion loss processes, the degree of corrosion damage decreases with increasing probability of reactive passivation and increases with increasing chemical reaction rate, increasing electrolyte concentration and increasing time step. The CA model was applied to simulate the growth and change of pitting corrosion of metal materials with their corrosion protection layer under damaged conditions. The corrosion model can simulate the corrosion morphology change characteristics similar to the real metal to the corrosion pit evolution simulation related research has certain scientific, validity, reference

Numerical Study of Random Corrosion Characteristics of Metal Based On the Cellular Automata Method

In the production process of coal chemical companies, the corrosion of metal equipment and the resulting shortening of its service life can cause safety hazards. Simulation modeling of pit emergence and development during corrosion evolution provides a new approach to corrosion research. By analyzing the effect of different parameters on causing corrosion to occur, it is possible to reflect the influence of complex physico-chemical systems. In this paper, the simulation of a meta-cellular automaton model of pit growth under diffusion and the introduction of a passivation probability to correct the chemical reaction rate are developed; The effect of reaction passivation probability, chemical reaction rate and diffusion coefficient on the degree of corrosion was also analyzed by means of quantitative analysis. The results show that for metal corrosion loss processes, the degree of corrosion damage decreases with increasing probability of reactive passivation and increases with increasing chemical reaction rate, increasing electrolyte concentration and increasing time step. The CA model was applied to simulate the growth and change of pitting corrosion of metal materials with their corrosion protection layer under damaged conditions. The corrosion model can simulate the corrosion morphology change characteristics similar to the real metal to the corrosion pit evolution simulation related research has certain scientific, validity, reference

Tropical storm-induced turbulent mixing and chlorophyll-a enhancement in the continental shelf southeast of Hainan Island

AbstractBased on moored observations and remote sensing data in July and August 2005, energy sources for enhancing turbulent mixing and possible mechanisms of phytoplankton bloom in the continental shelf southeast of Hainan Island under the influence of Washi, a fast-moving and weak tropical storm, are analyzed in this paper. Observations show that strong near-inertial internal waves were generated by the rapidly changing wind stress and the near-inertial energy was dissipated quickly across the thermocline. The strong turbulent mixing associated with the near-inertial baroclinic shear instability occurred with maximum eddy diffusivity above 3.2×10−4m2s−1, and the surface chlorophyll-a (Chl-a) concentration after the storm increased by 22.2%. The Chl-a concentration augment was inferred to be an upper ocean biophysical response to the enhanced near-inertial turbulent mixing which could increase the upward nutrient flux into the surface low eutrophic zone during the passage of Washi

Local Climate Zone in Xi’an City: A Novel Classification Approach Employing Spatial Indicators and Supervised Classification

The Local Climate Zone (LCZ), as a foundational element of urban climate zone classification proposed by Oke and Stewart, categorizes urban surface types based on 10 influential parameters affecting the urban heat island effect, such as building density, surface reflectivity, sky view factor, and surface roughness length. This method divides cities into 17 different Local Climate Zones (LCZs) to standardize climate observations and promote global climate research exchange, offering valuable insights for heat island studies. In this study, we enhance the existing local climate zones spatial classification approach by focusing on Xi’an city’s urban layout and architectural features. By using urban spatial indicators and employing a supervised classification approach and a spatial clustering method with land parcels as statistical units, we investigate typical urban areas and classify Xi’an’s land parcels into 17 or 15 distinct local climate zones. Subsequently, through the evaluation of two distinct classification methods, the most suitable urban microclimate zoning method for Xi’an city was selected. This optimization of the local climate zoning representation introduces a spatial classification method tailored to urban climate planning and control, utilizing urban spatial indicators and remote sensing data. The resulting urban climate zoning map not only supports sample selection for urban heat environment parameter observation but also aids urban planners in identifying spatial distribution patterns for climate zoning