Study of CT Images Processing with the Implementation of MLEM Algorithm using CUDA on NVIDIA’S GPU Framework

In medicine, the acquisition process in Computed Tomography Images (CT) is obtained by a reconstruction algorithm. The classical method for image reconstruction is the Filtered Back Projection (FBP). This method is fast and simple but does not use any statistical information about the measurements. The appearance of artifacts and its low spatial resolution in reconstructed images must be considered. Furthermore, the FBP requires of optimal conditions of the projections and complete sets of data. In this paper a methodology to accelerate acquisition process for CT based on the Maximum Likelihood Estimation Method (MLEM) algorithm is presented. This statistical iterative reconstruction algorithm uses a GPU Programming Paradigms and was compared with sequential algorithms in which the reconstruction time was reduced by up to 3 orders of magnitude while preserving image quality. Furthermore, they showed a good performance when compared with reconstruction methods provided by commercial software. The system, which would consist exclusively of a commercial laptop and GPU could be used as a fast, portable, simple and cheap image reconstruction platform in the future

Tractography of the Spider Monkey (\u3cem\u3eAteles geoffroyi\u3c/em\u3e) Corpus Callosum Using Diffusion Tensor Magnetic Resonance Imaging

The objective of this research was to describe the organization, connectivity and microstructure of the corpus callosum of the spider monkey (Ateles geoffroyi). Non-invasive magnetic resonance imaging and diffusion-tensor imaging were obtained from three subjects using a 3T Philips scanner. We hypothesized that the arrangement of fibers in spider monkeys would be similar to that observed in other non-human primates. A repeated measure (n = 3) of fractional anisotropy values was obtained of each subject and for each callosal subdivision. Measurements of the diffusion properties of corpus callosum fibers exhibited a similar pattern to those reported in the literature for humans and chimpanzees. No statistical difference was reached when comparing this parameter between the different CC regions (p = 0.066). The highest fractional anisotropy values corresponded to regions projecting from the corpus callosum to the posterior cortical association areas, premotor and supplementary motor cortices. The lowest fractional anisotropy corresponded to projections to motor and sensory cortical areas. Analyses indicated that approximately 57% of the fibers projects to the frontal cortex and 43% to the post-central cortex. While this study had a small sample size, the results provided important information concerning the organization of the corpus callosum in spider monkeys

Rapid bidirectional reorganization of cortical microcircuits.

Mature neocortex adapts to altered sensory input by changing neural activity in cortical circuits. The underlying cellular mechanisms remain unclear. We used blood oxygen level-dependent (BOLD) functional magnetic resonance imaging (fMRI) to show reorganization in somatosensory cortex elicited by altered whisker sensory input. We found that there was rapid expansion followed by retraction of whisker cortical maps. The cellular basis for the reorganization in primary somatosensory cortex was investigated with paired electrophysiological recordings in the periphery of the expanded whisker representation. During map expansion, the chance of finding a monosynaptic connection between pairs of pyramidal neurons increased 3-fold. Despite the rapid increase in local excitatory connectivity, the average strength and synaptic dynamics did not change, which suggests that new excitatory connections rapidly acquire the properties of established excitatory connections. During map retraction, entire excitatory connections between pyramidal neurons were lost. In contrast, connectivity between pyramidal neurons and fast spiking interneurons was unchanged. Hence, the changes in local excitatory connectivity did not occur in all circuits involving pyramidal neurons. Our data show that pyramidal neurons are recruited to and eliminated from local excitatory networks over days. These findings suggest that the local excitatory connectome is dynamic in mature neocortex

Characterization of Structures of Equivalent Tissue With a Pixel Detector

Research using hybrid pixel detectors in medical physics is on the rise. Timepix detectors have arrays of 256 × 256 pixels with a resolution of 55 μm. Here, and by using Timepix counts instead of Hounsfield units, we present a calibration curve of a Timepix detector analog to those used for CT calibration. Experimentation consisted of the characterization of electron density in 10 different kinds of tissue equivalent samples from a CIRS 062M phantom (lung, 3 kinds of bones, fat, breast, muscle, water and air). Radiation of the detector was performed using an orthodontic X-ray machine at 70 KeV and .06 second of tube current with a purpose-built aluminum collimator. Data acquisition was performed at 1 frame per second and taking 3 frames per phantom. We were able to find a curve whose behavior was similar to others already published. This will lead to the verification of the usage of Timepix for identification of different tissues in an organ

Study of secondary muons detected within the tunnels of the Cholula pyramid

The pyramid of Cholula was built at the beginning of 100 B.C. and during of period of 500 years it was finished, had several new constructions, based on the previous constructions. The primarily material of construction is the adobe. Early in 1931 archaeological excavations began with the intention of exploring the interior of the pyramid, excavations were stopped in 1971, and to date no further excavations have been carried out. This work shows the first measurements of muons, particles that are very penetrating, these are generated by primary cosmic rays that was incoming in the atmosphere and these generates a rain of secondary particles, among them the muons. To measure this kind of particles was implemented a detector system, it is formed by a scintillator plastic coupled to a tube photomultiplier; the signals were acquired by mean of an oscilloscope. The detector was collocated near of the center of the pyramid; the location belongs to the maxima concentration in mass over the detector. Graphs of the charge distribution, maximum amplitude and characteristic rise times of the generated pulses in a plastic scintillator are shown, this is scintillator was synthesized in the materials laboratory of the FCFM-BUAP. In addition the optical characterization of the same was realized

Effective description of general extensions of the Standard Model: the complete tree-level dictionary

We thank Nuria Rius and Arcadi Santamaria for an interesting discussion that motivated this work. We also thank Paco del Águila and Toni Pich for useful comments.We compute all the tree-level contributions to the Wilson coefficients of the dimension-six Standard-Model effective theory in ultraviolet completions with general scalar, spinor and vector feld content and arbitrary interactions. No assumption about the renormalizability of the high-energy theory is made. This provides a complete ultraviolet/ infrared dictionary at the classical level, which can be used to study the low-energy implications of any model of interest, and also to look for explicit completions consistent with low-energy dataThe work of J.C.C., M.P.V. and J.S. has been supported by the Spanish MICINN project FPA2013- 47836-C3-2-P, the MINECO project FPA2016-78220-C3-1-P (Fondos FEDER) and the Junta de Andalucía grant FQM101. The work of J.C.C. has also been supported by the Spanish MECD grant FPU14. The work of M.P.V. and J.S. has also been supported by the European Commission through the contract PITN-GA-2012-316704 (HIGGSTOOLS). J.C.C. is grateful for the hospitality of the Dipartimento di Fisica e Astronomia \Galileo Galilei" of the University of Padova during part of this work. J.S. would like to thank the Mainz Institute for Theoretical Physics (MITP) for its hospitality and partial support during the completion of this work