Clustering Field-Based Maize Phenotyping of Plant-Height Growth and Canopy Spectral Dynamics Using a UAV Remote-Sensing Approach

Phenotyping under field environmental conditions is often considered as a bottleneck in crop breeding. Unmanned aerial vehicle high throughput phenotypic platform (UAV-HTPP) mounted with multi-sensors offers an efficiency, non-invasive, flexible and low-cost solution in large-scale breeding programs compared to ground investigation, especially where measurements are time-sensitive. This study was conducted at the research station of the Xiao Tangshan National Precision Agriculture Research Center of China. Using the UAV-HTPP, RGB and multispectral images were acquired during four critical growth stages of maize. We present a method of extracting plant height (PH) at the plot scale using UAV-HTPP based on the spatial structure of the maize canopy. The core steps of this method are segmentation and spatial Kriging interpolation based on multiple neighboring maximum pixels from multiple plants in a plot. Then, the relationships between the PH extracted from imagery collected using UAV-HTPP and the ground truth were examined. We developed a semi-automated pipeline for extracting, analyzing and evaluating multiple phenotypic traits: canopy cover (CC), normalized vegetation index (NDVI), PH, average growth rate of plant height (AGRPH), and contribution rate of plant height (CRPH). For these traits, we identify genotypic differences and analyze and evaluate dynamics and development trends during different maize growth stages. Furthermore, we introduce a time series data clustering analysis method into breeding programs as a tool to obtain a novel representative trait: typical curve. We classified and named nine types of typical curves of these traits based on curve morphological features. We found that typical curves can detect differences in the genetic background of traits. For the best results, the recognition rate of an NDVI typical curve is 59%, far less than the 82.3% of the CRPH typical curve. Our study provides evidence that the PH trait is among the most heritable and the NDVI trait is among the most easily affected by the external environment in maize

Negative Propagation Effects in Two-Dimensional Silicon Photonic Crystals

We demonstrated negative refraction effects of light propagating in two-dimensional square and hexagonal-lattice silicon photonic crystals (PhCs). The plane wave expansion method was used to solve the complex eigenvalue problems, as well as to find dispersion curves and equal-frequency contour (EFC). The finite-difference time-domain (FDTD) method was used to simulate and visualize electromagnetic wave propagation and scattering in the PhCs. Theoretical analyses and numerical simulations are presented. Two different kinds of negative refractions, namely, all-angle negative refraction (AANR) without a negative index and negative refraction with effective negative index, have been verified and compared

Lateral mobility of FcγRIIa is reduced by protein kinase C activation

AbstractThe lateral mobility of membrane proteins can reflect the extent of various protein-protein interactions. Using the fluorescence recovery after photobleaching technique, we have studied the lateral mobility of human FcγRIIa and some FcγRIIa mutants expressed in either P388D1 cells, a mouse macrophagelike cell line, or in Chinese hamster ovary (CHO) cells [1]. After treatment with phorbol myristate acetate (PMA), only the FcγRIIa molecules capable of mediating rapid endocytosis of immune complexes exhibited a reduced lateral diffusion coefficient with respect to untreated controls. Wild type FcγRIIa expressed in CHO cells, and nonfunctional FcγRIIa mutants expressed in P388D1 cells did not show any differences upon PMA treatment. This finding suggests that protein kinase C activation evokes additional protein-protein interactions with the cytoplasmic domain of functional FcγRIIa, which reduced receptor lateral mobility. The identity of these putative interacting proteins and the nature of the interactions remain to be elucidated

Advances in the role of STAT3 in macrophage polarization

The physiological processes of cell growth, proliferation, differentiation, and apoptosis are closely related to STAT3, and it has been demonstrated that aberrant STAT3 expression has an impact on the onset and progression of a number of inflammatory immunological disorders, fibrotic diseases, and malignancies. In order to produce the necessary biological effects, macrophages (M0) can be polarized into pro-inflammatory (M1) and anti-inflammatory (M2) types in response to various microenvironmental stimuli. STAT3 signaling is involved in macrophage polarization, and the research of the effect of STAT3 on macrophage polarization has gained attention in recent years. In order to provide references for the treatment and investigation of disorders related to macrophage polarization, this review compiles the pertinent signaling pathways associated with STAT3 and macrophage polarization from many fundamental studies

Presence of virus neutralizing antibodies in cerebral spinal fluid correlates with non-lethal rabies in dogs.

BACKGROUND: Rabies is traditionally considered a uniformly fatal disease after onset of clinical manifestations. However, increasing evidence indicates that non-lethal infection as well as recovery from flaccid paralysis and encephalitis occurs in laboratory animals as well as humans. METHODOLOGY/PRINCIPAL FINDINGS: Non-lethal rabies infection in dogs experimentally infected with wild type dog rabies virus (RABV, wt DRV-Mexico) correlates with the presence of high level of virus neutralizing antibodies (VNA) in the cerebral spinal fluid (CSF) and mild immune cell accumulation in the central nervous system (CNS). By contrast, dogs that succumbed to rabies showed only little or no VNA in the serum or in the CSF and severe inflammation in the CNS. Dogs vaccinated with a rabies vaccine showed no clinical signs of rabies and survived challenge with a lethal dose of wild-type DRV. VNA was detected in the serum, but not in the CSF of immunized dogs. Thus the presence of VNA is critical for inhibiting virus spread within the CNS and eventually clearing the virus from the CNS. CONCLUSIONS/SIGNIFICANCE: Non-lethal infection with wt RABV correlates with the presence of VNA in the CNS. Therefore production of VNA within the CNS or invasion of VNA from the periphery into the CNS via compromised blood-brain barrier is important for clearing the virus infection from CNS, thereby preventing an otherwise lethal rabies virus infection

Transcriptome Phase Distribution Analysis Reveals Diurnal Regulated Biological Processes and Key Pathways in Rice Flag Leaves and Seedling Leaves

Plant diurnal oscillation is a 24-hour period based variation. The correlation between diurnal genes and biological pathways was widely revealed by microarray analysis in different species. Rice (Oryza sativa) is the major food staple for about half of the world's population. The rice flag leaf is essential in providing photosynthates to the grain filling. However, there is still no comprehensive view about the diurnal transcriptome for rice leaves. In this study, we applied rice microarray to monitor the rhythmically expressed genes in rice seedling and flag leaves. We developed a new computational analysis approach and identified 6,266 (10.96%) diurnal probe sets in seedling leaves, 13,773 (24.08%) diurnal probe sets in flag leaves. About 65% of overall transcription factors were identified as flag leaf preferred. In seedling leaves, the peak of phase distribution was from 2:00am to 4:00am, whereas in flag leaves, the peak was from 8:00pm to 2:00am. The diurnal phase distribution analysis of gene ontology (GO) and cis-element enrichment indicated that, some important processes were waken by the light, such as photosynthesis and abiotic stimulus, while some genes related to the nuclear and ribosome involved processes were active mostly during the switch time of light to dark. The starch and sucrose metabolism pathway genes also showed diurnal phase. We conducted comparison analysis between Arabidopsis and rice leaf transcriptome throughout the diurnal cycle. In summary, our analysis approach is feasible for relatively unbiased identification of diurnal transcripts, efficiently detecting some special periodic patterns with non-sinusoidal periodic patterns. Compared to the rice flag leaves, the gene transcription levels of seedling leaves were relatively limited to the diurnal rhythm. Our comprehensive microarray analysis of seedling and flag leaves of rice provided an overview of the rice diurnal transcriptome and indicated some diurnal regulated biological processes and key functional pathways in rice

Detrimental Effects and Prevention of Acidic Electrolytes on Oxygen Reduction Reaction Catalytic Performance of Heteroatom-Doped Graphene Catalysts

Article describes study in which the density functional theory (DFT) methods were applied to understand the inferior performance of doped graphene in acid

Omnidirectional whispering-gallery-mode lasing in GaN microdisk obtained by selective area growth on sapphire substrate

The optical properties of hexagonal GaN microdisk arrays grown on sapphire substrates by selective area growth (SAG) technique were investigated both experimentally and theoretically. Whispering-gallery-mode (WGM) lasing is observed from various directions of the GaN pyramids collected at room temperature, with the dominant lasing mode being Transverse-Electric (TE) polarized. A relaxation of compressive strain in the lateral overgrown region of the GaN microdisk is illustrated by photoluminescence (PL) mapping and Raman spectroscopy. A strong correlation between the crystalline quality and lasing behavior of the GaN microdisks was also demonstrated