8 research outputs found
Differential gene expression in nearly isogenic lines with QTL for partial resistance to Puccinia hordei in barley
- Author
- A Druka
- A Druka
- AF Bent
- Anton Vels
- AR Hardham
- Arnis Druka
- B Field
- BG Hansen
- C Muessig
- C Wagner
- D Fu
- DB Collinge
- E Potokina
- E Potokina
- E Zimnoch-Guzowska
- F Mauch
- FM Ausubel
- GL Wang
- H Jafary
- H Jafary
- H Shinshi
- HC Yi
- J Glazebrook
- J Glazebrook
- Jenny Morris
- K Broglie
- K Datta
- K Kazan
- K Maleck
- L Shan
- LC van Loon
- MC Heath
- MYA Tan
- N Ori
- NC Collins
- P Bittel
- P Bittel
- P Krishna
- PA Anderson
- Peter E Hedley
- Q Zhu
- R Bari
- R Panstruga
- R van Berloo
- RA Caldo
- RA Dixon
- RC Jansen
- RE Niks
- RE Niks
- Rients E Niks
- RJ O'Connell
- Robbie Waugh
- RP Wise
- S Pflieger
- S Rainier
- SG Krattinger
- T Eulgem
- TC Marcel
- TC Marcel
- TC Marcel
- Thierry C Marcel
- TJ Close
- V Nicaise
- W Lin
- W Xiao
- X Chen
- X Qi
- X Qi
- Xinwei Chen
- YH Yang
- Z Yang
- ZW Luo
- Publication venue
- BioMed Central
- Publication date
- 01/01/2010
- Field of study
<p>Abstract</p> <p>Background</p> <p>The barley-<it>Puccinia hordei </it>(barley leaf rust) pathosystem is a model for investigating partial disease resistance in crop plants and genetic mapping of phenotypic resistance has identified several quantitative trait loci (QTL) for partial resistance. Reciprocal QTL-specific near-isogenic lines (QTL-NILs) have been developed that combine two QTL, <it>Rphq</it>2 and <it>Rphq</it>3, the largest effects detected in a recombinant-inbred-line (RIL) population derived from a cross between the super-susceptible line L94 and partially-resistant line Vada. The molecular mechanism underpinning partial resistance in these QTL-NILs is unknown.</p> <p>Results</p> <p>An Agilent custom microarray consisting of 15,000 probes derived from barley consensus EST sequences was used to investigate genome-wide and QTL-specific differential expression of genes 18 hours post-inoculation (hpi) with <it>Puccinia hordei</it>. A total of 1,410 genes were identified as being significantly differentially expressed across the genome, of which 55 were accounted for by the genetic differences defined by QTL-NILs at <it>Rphq</it>2 and <it>Rphq</it>3. These genes were predominantly located at the QTL regions and are, therefore, positional candidates. One gene, encoding the transcriptional repressor Ethylene-Responsive Element Binding Factor 4 (<it>HvERF4</it>) was located outside the QTL at 71 cM on chromosome 1H, within a previously detected eQTL hotspot for defence response. The results indicate that <it>Rphq</it>2 or <it>Rphq</it>3 contains a <it>trans</it>-eQTL that modulates expression of <it>HvERF4</it>. We speculate that HvERF4 functions as an intermediate that conveys the response signal from a gene(s) contained within <it>Rphq</it>2 or <it>Rphq</it>3 to a host of down-stream defense responsive genes. Our results also reveal that barley lines with extreme or intermediate partial resistance phenotypes exhibit a profound similarity in their spectrum of <it>Ph</it>-responsive genes and that hormone-related signalling pathways are actively involved in response to <it>Puccinia hordei</it>.</p> <p>Conclusions</p> <p>Differential gene expression between QTL-NILs identifies genes predominantly located within the target region(s) providing both transcriptional and positional candidate genes for the QTL. Genetically mapping the differentially expressed genes relative to the QTL has the potential to discover <it>trans</it>-eQTL mediated regulatory relays initiated from genes within the QTL regions.</p
Structural Variabilities in ÎČ-Lactamase (blaA) of Different Biovars of Yersinia enterocolitica: Implications for ÎČ-Lactam Antibiotic and ÎČ-Lactamase Inhibitor Susceptibilities
- Author
- Publication venue
- 'Public Library of Science (PLoS)'
- Publication date
- Field of study
Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing
- Author
- A Beceiro
- A Gnirke
- AE Mather
- AG McArthur
- B Stecher
- C Munck
- C Pal
- CA Gilchrist
- Consortium THMP
- CW Knapp
- E Zankari
- F Baquero
- F Wichmann
- GR Feehery
- I Kinde
- J Chen
- J Port
- J Vollmers
- JB Herrick
- JL MartĂnez
- JN Paulson
- JW Beaber
- K Bush
- K Li
- KJ Forsberg
- KR Clarke
- L Chen
- L Chen
- M Monod
- M Willmann
- MDJ Lynch
- NR Noyes
- NR Noyes
- PJ McMurdie
- R Lamendella
- RR Miller
- SJ Bent
- SK Gupta
- SP Gow
- SR Kennedy
- T Briese
- T Kivioja
- T Looft
- TN Wylie
- TR Mercer
- W Gu
- ZW Bent
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- Field of study
Preferential Amplification of Pathogenic Sequences
- Author
- A Dobin
- A Morgulis
- A Negredo
- AD Radford
- B Hoffmann
- C Firth
- CY Chiu
- EP Consortium
- ES Lander
- EW Sayers
- F Tang
- G Marcais
- G Palacios
- G Rizk
- G Weber
- GR Feehery
- H Feng
- H Feng
- J Chen
- J Chen
- J Chen
- J Shendure
- J Shendure
- L Barzon
- LK McMullan
- M Gonzalez-Porta
- ME Quinones-Mateu
- MG Grabherr
- ML Metzker
- N Cloonan
- NL Yozwiak
- R Inagi
- R Schmieder
- S Djebali
- SV Angiuoli
- T Rosseel
- W Li
- X Huang
- Y Ruan
- Y Xu
- Z Chen
- Z Zhang
- ZW Bent
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- Field of study
Use of a Capture-Based Pathogen Transcript Enrichment Strategy for RNA-Seq Analysis of the Francisella Tularensis LVS Transcriptome during Infection of Murine Macrophages
- Author
- A Brotcke
- A Brotcke
- A Chong
- A Qin
- AH Fortier
- AJ Westermann
- AR Quinlan
- B Langmead
- BL Bell
- BL Mortensen
- BW Buchan
- C Checroun
- C Trapnell
- CG Gray
- David M. Brazel
- DC Grainger
- DD Crane
- DL Clemens
- DS Weiss
- DT Dennis
- FE Nano
- FE Nano
- GS Schulert
- H Li
- H Lindgren
- I Golovliov
- J Ellis
- J Su
- JA Edwards
- JC Charity
- JC Charity
- JE Broms
- JR Fuller
- JT Sullivan
- K Alkhuder
- K Deng
- K Kiss
- K Mack
- K Ray
- KA Walters
- KC Lee
- L Bönquist
- LD Rotz
- M Faron
- M Santic
- Mary B. Tran-Gyamfi
- MG Moule
- MK McLendon
- N Grall
- NP Mohapatra
- OM de Bruin
- PC Oyston
- PC Oyston
- PM Ireland
- PS Kraemer
- R Pechous
- R Tempel
- Rachelle Y. Hamblin
- RD Pechous
- RL McCaffrey
- S Anders
- S Dai
- SA Langevin
- SM Chiang
- Steven S. Branda
- T Mörner
- TD Wehrly
- TM Maier
- VA Vandernoot
- Victoria A. VanderNoot
- WL Sammons-Jackson
- WS Yeo
- X Zogaj
- Yung-Fu Chang
- Zachary W. Bent
- ZW Bent
- Publication venue
- 'Public Library of Science (PLoS)'
- Publication date
- Field of study
Transcriptome Analysis of the Capra hircus Ovary
- Author
- A Boyer
- A Fournier
- A Ganguly
- A Garcia
- A Pashaj
- A Regassa
- B Zhu
- BN Harwood
- C Tong
- C Zhang
- CF Lanes
- CS Chen
- D Raman
- Frederick C. C. Leung
- Geoffrey L Hammond
- H Huang
- H Ma
- HX Wang
- J Aprea
- J Vas
- Jia Hua Zhang
- Jiao Jiao Zhang
- JJ Eppig
- JL Chitwood
- JM Souza-Fabjan
- JY Peng
- KM Fisch
- L Wang
- LB Harding
- Li Juan Wang
- LR Faustino
- N Alkan
- NB Metcalfe
- P Jorth
- PQ Wang
- Q He
- QY Sun
- R Ranjan
- R Seger
- RB Gilchrist
- Ri Su Na
- RK Sharma
- RW Chow
- S Alldinger
- S Brunet
- S Mamo
- S Xue
- SS Chavan
- T Xu
- UM Igwebuike
- W Harrouk
- X Lin
- XD Zi
- Xiao Wei Sun
- XJ Han
- YJ Huang
- YK Ahn
- Yong Ju Zhao
- Z Zhao
- Zhong Quan Zhao
- ZW Bent
- Publication venue
- 'Public Library of Science (PLoS)'
- Publication date
- Field of study
Validation of a novel Mho microarray for a comprehensive characterisation of the Mycoplasma hominis action in HeLa cell infection
- Author
- A Kitzerow
- A Kitzerow
- A Rabatinova
- A Skapski
- A Targosz
- AJ Westermann
- AR Kwon
- B Henrich
- B Henrich
- Birgit Henrich
- BM Bolstad
- C Cacciotto
- C Garzoni
- CP Ponting
- CR MacKenzie
- D Ren
- D Taylor-Robinson
- E Hertzen
- FJ Diaz-Garcia
- Freya Kretzmer
- G Browning
- H Echenique-Rivera
- H Zhang
- I Samolski
- J Goret
- J Xu
- JA Schmidt
- JS Mendes
- K Aktories
- Karl Köhrer
- KB Waites
- KM Hallamaa
- L Flori
- L Li
- LD Olson
- LT Jensen
- M Hopfe
- M Hopfe
- M Hopfe
- M Hopfe
- M Hopfe
- M Kanehisa
- M Wium
- Mitchell F. Balish
- MJ Allen-Daniels
- MJ Calcutt
- MJ Calcutt
- ML Madsen
- MW Pfaffl
- N Mobius
- Q Zhang
- R Gdoura
- R McClure
- René Deenen
- S Degrange
- S Hegde
- S Khan
- S Pereyre
- SH Feng
- SM Khan
- W Xu
- YA Barykova
- ZW Bent
- Publication venue
- 'Public Library of Science (PLoS)'
- Publication date
- Field of study
ViskositÀt
- Author
- A Artemcenko
- A Baader
- A Bak
- A Banchettr
- A Banchettr
- A Bartoli
- A Bartoli
- A Bearden
- A Bestelmeyer
- A Bestelmeyer
- A Bienas
- A Bienas
- A Bock de
- A Boek
- A Bramley
- A Broese Groeneu van
- A Camerton
- A Campetti
- A Crozier
- A Dietzel
- A Einstein
- A Einstein
- A Emmerich
- A Findlay
- A Fortier
- A Fortier
- A Gille
- A Gorke
- A Heydweiller
- A Itterbeek
- A Itterbeek
- A Itterbeek
- A Itterbeek
- A Itterbeek
- A Itterbeek
- A Jaumotte
- A Jaumotte
- A Jobling
- A Jobling
- A Kanitz
- A Klemenc
- A Knappworst
- A Knappworst
- A Kolossowski
- A Korosi
- A Kryagowa
- A Kundt
- A Königer
- A Leontyewa
- A Maman
- A Michels
- A Michels
- A Michels
- A Michels
- A Napolitano
- A Naumowa
- A Pisarew
- A Pochettino
- A Röder
- A Sachanow
- A Sakhanow
- A Schmidt
- A Sellerie
- A Simon
- A Smits
- A Sprung
- A Swinarski
- A Swinarski
- A Timidei
- A Troyer
- A Troyer
- A Troyer De
- A Wijkander
- AA Blanchard
- AA Blanchard
- AA Glagolewa
- AA Mamedow
- AA Romanow
- AA Wertman
- AA Wostryakow
- AA Zalikin
- AB Bdanowskiáż
- AB Cleave
- AB Cleave
- AB Garrett
- AB Garrett
- AC Chatterji
- AC Hollis-Hallett
- AC Hollis-Hallett
- AC Ling
- AC Rocce
- ACD Rivett
- AD Abbott
- AE Dunstan
- AE Dunstan
- AE Dunstan
- AE Dunstan
- AE Dunstan
- AE Dunstan
- AE Dunstan
- AE Dunstan
- AE Dunstan
- AE Dunstan
- AE Dunstan
- AE Dunstan
- AE Dunstan
- AE Luckiy
- AE Luckiy
- AE Schuir
- AE Stearn
- AF Benning
- AF Schmelzle
- AG Amelin
- AG Amelin
- AG Bergman
- AG Clarke
- AG Mussel
- AG Nasini
- AG Nasini
- AG Nasini
- AH Campbell
- AJ Anderson
- AJ Barlow
- AJ Batschinski
- AJ Batschinski
- AJ Batschinski
- AJ Deitsch
- AJ Lewis
- AJ Rabinowitsch
- AJ Teller
- AJ Wyk Van der
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- AK Doolittle
- AK Mukherjee
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- AR Barbour
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- AS Chacravarti
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- AW Pamfilow
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- M Giua
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- M Hlasko
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- M Kaminsky
- M Laue
- M Louis
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- M Mclnally
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- M Mooney
- M Nadi
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- M Poiseuille
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- M Prodâhomme
- M Reinganum
- M Rigby
- M Scanavy-Grigoriewa
- M Shimotaki
- M Shimotaki
- M Solomon
- M Souders
- M Stuckgold
- M Sulâgina
- M Tamura
- M Thiesen
- M Trautz
- M Trautz
- M Trautz
- M Trautz
- M Trautz
- M Trautz
- M Trautz
- M Trautz
- M Trautz
- M Trautz
- M Trautz
- M Trautz
- M Trautz
- M Trautz
- M Trautz
- M Trautz
- M Trautz
- M Wildhagen
- M Wogau
- M Yasuda
- M Äepeleweckiáż
- MA Graham
- MA KloÄko
- MA KloÄko
- MA Opykhtina
- MA Weksler
- MC Brinkman
- MC Fontaine-Limbourg
- MD Beludew
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- MG Frohberg
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- MN States
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- MR Nayar
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- MS Lyons
- MS Rudenko
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- N Eyring
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- O Köhler
- O Maas
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- O Ruff
- O Scarpa
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- O Zimmer
- OA Osipow
- OE Frivold
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- OF Tower
- OL Hughes
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- OLL Brown
- ON Schokina
- OW Edwards
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- P Assarsson
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- P Breitenbach
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- R Anderson
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- R Fanelli
- R Fanelli
- R Fricke
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- R Kremann
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- R Lorentz
- R Lorenz
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- R Plank
- R Riemschneider
- R Roscoe
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- R Schmidt
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- RP Airapetowa
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- RV Helm
- RV Theiss
- RW Gallant
- RW Haywood
- RW Moulton
- RW Schiessler
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- RWH Webeler
- S Alamelu
- S Alamelu
- S Arrhenius
- S Brunet
- S Chella
- S Erk
- S Erk
- S Erk
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- S Erk
- S Förster
- S Karpacew
- S Kikuhi
- S Koch
- S Koch
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- S Landa
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- S Makishima
- S Mallikarjun
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- S Mizushima
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- S Sheppard
- S Weissman
- S ZĂ€mirea
- SA Mumford
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- SC Barnett
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- SD Gromakow
- SE Babb
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- SF Babak
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- SP Rao
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- ST Bowden
- ST Dobinski
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- SW Holman
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- SZ MikhaĂŒ
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- T Doi
- T Doi
- T Doi
- T Erdey-GrĂčz
- T Erdey-GrĂčz
- T Graham
- T Graham
- T Graham
- T Graham
- T Graham
- T Ishikawa
- T Kihara
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- T Kowar
- T Kume
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- T Makita
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- T Naiki
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- T Sagawa
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- T Titani
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- T Tonomura
- T Tonomura
- TC Toye
- TD Ling
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- TW Jackson
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- TY Ju
- V Crescenti
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- V Griffing
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- V Lantz
- V Vand
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- VC Reinsborough
- VCG Trew
- VD Majumdar
- VE Denny
- VK Venkatesan
- VM Heston
- VR Main
- VR Stott
- VV Chandramouli
- W Bambynek
- W Bambynek
- W Geiseler
- W Groth
- W Herz
- W Herz
- W Herz
- W Herz
- W Herz
- W Herz
- W Herz
- W Koenig
- W Konstantinow
- W Kopsch
- W Krings
- W Licht
- W Lohse
- W Mazer
- W Meissner
- W Menz
- W Morrison-Jackson
- W Ostwald
- W Petrow
- W Pleskow
- W Plotnikow
- W Radecker
- W Riemann
- W Ruckes
- W Schiller
- W Schudel
- W Schugayew
- W Sutherland
- W Tchugayew
- W Weber
- WA Everhart
- WA Granzun
- WA Hare
- WA Hawksworth
- WA Kireew
- WA Pardee
- WA Petrow
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- WA Usolâcewa
- WB Falkowski
- WC McCaughey
- WD Weatherford
- WE Grant
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- WE Keller
- WF Barber
- WF Darke
- WF Giauque
- WF Giauque
- WF Schottky
- WF Seyer
- WG Komarenko
- WG Parks
- WG Shilling
- WH Carothers
- WH Gibson
- WH Harcher
- WH Keesom
- WH Keeson
- WH Mears
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- WI Semisin
- WI Wallace
- WJ Fisher
- WJ Fisher
- WJ Fisher
- WJ Fisher
- WJ Heikkilla
- WJ Jones
- WJ Thomas
- WJ Wallace
- WK Semencenko
- WL Robb
- WL Sibbit
- WL Zyazew
- WM Bleakney
- WM Cox
- WM Hartford
- WM Jackson
- WN Baker
- WN Baker
- WN Bond
- WN Bond
- WN Cox
- WP Barzakowski
- WP Masowec
- WR Bousfield
- WR Bousfield
- WR Kelly
- WR Wijk
- WRD Jones
- WS Barnhart
- WS Galinker
- WS Galinker
- WS Groenier
- WS Schugayew
- WS Schugayew
- WT Foley
- WT Slawyanskiáż
- WT Slawyanskiáż
- WT Sumarokow
- WV Houston
- WW Pigulewskii
- WW Stender
- WW Steward
- WW Taylor
- WW Udowenko
- WW Udowenko
- WW Udowenko
- WW Udowenko
- WY Anosow
- Y BjornstÄhl
- Y Delcourt
- Y Ishida
- Y Kozlow
- Y Nakagawa
- Y Sing
- Y Suga
- YA Fialkow
- YAL Dutcak
- YAL Dutcak
- YAL Dutcak
- YC Wu
- YM Ping
- YP Gokhstein
- YP Gokhstein
- YS Chiong
- YS Chiong
- YY Fialkow
- YY Fialkow
- YY Fialkow
- YY Fialkow
- YY Fialkow
- YY Fialkow
- Z FriedlÀnder
- Z Golik
- Z Golik
- Z Reyer
- ZW Kondratenko
- ZW Wolkowa
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- 01/01/2013
- Field of study