肥満糖尿病ラットにおける胃バイパス後の選択的腸管刺激による糖代謝への影響

研究科: 医学薬学府学位:千大院医薬博甲第医1000号要約博士(医学)千葉大

Mesocosm_SH.scaffold.fa.blast.filter.summary.scaf

List subset of scaffolds by species that were used to map to references

mitogenomes_all_corrected_reading_frame.v0301

File contains the reference sequences used for mapping the .sam files to and is needed for importing .sam files into Geneious for SNP analysi

Mesocosm_SH.aligning.unique.sorted.MarkedDuplicates

File contains all reads mapped to references considered in study. The file in conjunction with mitogenomes_all_corrected_reading_frame.v0301.txt allows the SNPs to be called in using Geneious

JudayCreek.scaffold.fa.blast.filter.summary.scaf

List subset of scaffolds by species that were used to map to references in Geneious and is illustrated in Figure 2 of manuscript

commands_used_for_analysis

All commands used to execute bioinformatic pipeline

norm_50x

Command used to down sample reads for de novo assembly

Mock.50x.scaffold

Contains all scaffolds that were assembled from the mock community sample

Mesocosm_EH.aligning.unique.sorted.MarkedDuplicates

File contains all reads mapped to references considered in study. The file in conjunction with mitogenomes_all_corrected_reading_frame.v0301.txt allows the SNPs to be called in using Geneious

JudayCreek.scaffold

Contains all scaffolds that were assembled from the Juday Creek water samples