Spectroscopy of broad absorption line quasars at 3≲z≲53\lesssim z \lesssim 5 -- I: evidence for quasar winds shaping broad/narrow emission line regions

We present an observational study of 22 broad absorption line quasars (BAL QSOs) at $3\lesssim z \lesssim5$ based on optical/near-IR spectroscopy, aiming to investigate quasar winds and their effects. The near-IR spectroscopy covers the \hb\ and/or \mgii\ broad emission lines (BELs) for these quasars, allowing us to estimate their central black hole (BH) masses in a robust way. We found that our BAL QSOs on average do not have a higher Eddington ratio than that from non-BAL QSOs matched in redshift and/or luminosity. In a subset consisting of seven strong BAL QSOs possessing sub-relativistic BAL outflows, we see the prevalence of large \civ-BEL blueshift ($\sim$3100 km s$^{-1}$) and weak \oiii\ emission (particularly the narrow \oiii$\lambda$5007 component), indicative of nuclear outflows affecting the narrow emission-line (NEL) regions. In another subset consisting of thirteen BAL QSOs having simultaneous observations of \mgii\ and \hb, we found a strong correlation between 3000~\AA\ and 5000~\AA\ monochromatic luminosity, consistent with that from non-BAL QSOs matched in redshift and luminosity; however, there is no correlation between \mgii\ and \hb\ in FWHM, likely due to nuclear outflows influencing the BEL regions. Our spectroscopic investigations offer strong evidence that the presence of nuclear outflows plays an important role in shaping the BEL/NEL regions of these quasars and possibly, regulating the growth of central supermassive black holes (SMBHs). We propose that BEL blueshift and BAL could be different manifestations of the same outflow system viewed at different sightlines and/or phases.Comment: 13 pages, 10 figures. Accepted for publication in Ap

Variability of Low-ionization Broad Absorption Line Quasars Based on Multi-epoch Spectra from The Sloan Digital Sky Survey

We present absorption variability results for 134 bona fide \mgii\ broad absorption line (BAL) quasars at 0.46~$\lesssim z \lesssim$~2.3 covering days to $\sim$ 10 yr in the rest frame. We use multiple-epoch spectra from the Sloan Digital Sky Survey, which has delivered the largest such BAL-variability sample ever studied. \mgii-BAL identifications and related measurements are compiled and presented in a catalog. We find a remarkable time-dependent asymmetry in EW variation from the sample, such that weakening troughs outnumber strengthening troughs, the first report of such a phenomenon in BAL variability. Our investigations of the sample further reveal that (i) the frequency of BAL variability is significantly lower (typically by a factor of 2) than that from high-ionization BALQSO samples; (ii) \mgii\ BAL absorbers tend to have relatively high optical depths and small covering factors along our line of sight; (iii) there is no significant EW-variability correlation between \mgii\ troughs at different velocities in the same quasar; and (iv) the EW-variability correlation between \mgii\ and \aliii\ BALs is significantly stronger than that between \mgii\ and \civ\ BALs at the same velocities. These observational results can be explained by a combined transverse-motion/ionization-change scenario, where transverse motions likely dominate the strengthening BALs while ionization changes and/or other mechanisms dominate the weakening BALs.Comment: 24 pages, accepted for publication in ApJ

Crystal structure of E. coli arginyl-tRNA synthetase and ligand binding studies revealed key residues in arginine recognition

The arginyl-tRNA synthetase (ArgRS) catalyzes the esterification reaction between L-arginine and its cognate tRNA(Arg). Previously reported structures of ArgRS shed considerable light on the tRNA recognition mechanism, while the aspect of amino acid binding in ArgRS remains largely unexplored. Here we report the first crystal structure of E. coli ArgRS (eArgRS) complexed with L-arginine, and a series of mutational studies using isothermal titration calorimetry (ITC). Combined with previously reported work on ArgRS, our results elucidated the structural and functional roles of a series of important residues in the active site, which furthered our understanding of this unique enzyme. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s13238-013-0012-1) contains supplementary material, which is available to authorized users