Effects of blast furnace slag on the immobilization, plant uptake and translocation of Cd in a contaminated paddy soil

The potential toxicity of Cd to soil and rice plant severely threaten human health. This study was conducted to investigate the remediation effects of blast furnace slag (BFS) on the bioavailability of Cd in a contaminated paddy soil from a perspective of soil solution chemistry. Batch experiments, pot culture experiments, and principal analysis (PCA) were used to study the effects and mechanisms of BFS addition changing Cd chemical behavior and Cd toxicity. Results indicated that BFS facilitated Cd adsorption in soils, increased pH, Eh, and EC values in soil solution, whereas reduced dissolved Cd content. BFS amendment was efficient in decreasing root Cd intake and Cd upward transport in rice plant, with the Cd translocation factor in brown rice decreased by ∼ 75% (BFS treatment, 6‰ wt) relative to Cd treatment, which in turn increased rice biomass and grain yield. PCA indicated that the dissolved Cd concentration had a close relationship with soil pH and metal concentration in soil solution. Results from this study indicated that BFS had potential ability for either immobilization or remobilization of Cd in soils, and the findings have important implications for Cd-polluted soil remediation or other resource utilization with slag-based materials

The complete mitochondrial genome sequence and phylogenetic analysis of Alpine Merino sheep (Ovis aries)

Alpine Merino sheep is one of the most important fine-wool sheep breeds in China. In this study, we present the complete mitogenome of Alpine Merino sheep for the first time. The genome has a length of 16,619bp, containing 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, and a control region (D-loop). Phylogenetically, the Alpine Merino sheep is closer to Oula Tibetan sheep and Tashkurgan sheep. This report provided new data for the phylogeny of Alpine Merino sheep

Quantitative proteomic analysis identified differentially expressed proteins with tail/rump fat deposition in Chinese thin- and fat-tailed lambs.

Tail adipose as one of the important functional tissues can enhance hazardous environments tolerance for sheep. The objective of this study was to gain insight into the underlying development mechanisms of this trait. A quantitative analysis of protein abundance in ovine tail/rump adipose tissue was performed between Chinese local fat- (Kazakh, Hu and Lanzhou) and thin-tailed (Alpine Merino, Tibetan) sheep in the present study by using lable-free approach. Results showed that 3400 proteins were identified in the five breeds, and 804 were differentially expressed proteins, including 638 up regulated proteins and 83 down regulated proteins in the tail adipose tissues between fat- and thin-tailed sheep, and 8 clusters were distinguished for all the DEPs' expression patterns. The differentially expressed proteins are mainly associated with metabolism pathways and peroxisome proliferator activated receptor signaling pathway. Furthermore, the proteomics results were validated by quantitative real-time PCR and Western Blot. Our research has also suggested that the up-regulated proteins ACSL1, HSD17β4, FABP4 in the tail adipose tissue might contribute to tail fat deposition by facilitating the proliferation of adipocytes and fat accumulation in tail/rump of sheep. Particularly, FABP4 highly expressed in the fat-tail will play an important role for tail fat deposition. Our study might provide a novel view to understanding fat accumulation in special parts of the body in sheep and other animals

Genome-Wide Selective Signatures Reveal Candidate Genes Associated with Hair Follicle Development and Wool Shedding in Sheep

Hair follicle development and wool shedding in sheep are poorly understood. This study investigated the population structures and genetic differences between sheep with different wool types to identify candidate genes related to these traits. We used Illumina ovine SNP 50K chip genotyping data of 795 sheep populations comprising 27 breeds with two wool types, measuring the population differentiation index (Fst), nucleotide diversity (θπ ratio), and extended haplotype homozygosity among populations (XP-EHH) to detect the selective signatures of hair sheep and fine-wool sheep. The top 5% of the Fst and θπ ratio values, and values of XP-EHH PRX, SOX18, TGM3, and TCF3 genes related to hair follicle development and wool shedding were strongly selected. Our results indicated that these methods identified important genes related to hair follicle formation, epidermal differentiation, and hair follicle stem cell development, and provide a meaningful reference for further study on the molecular mechanisms of economically important traits in sheep

Genetic Diversity and Phylogenetic Evolution of Tibetan Sheep Based on mtDNA D-Loop Sequences

<div><p>The molecular and population genetic evidence of the phylogenetic status of the Tibetan sheep (<i>Ovis aries</i>) is not well understood, and little is known about this species’ genetic diversity. This knowledge gap is partly due to the difficulty of sample collection. This is the first work to address this question. Here, the genetic diversity and phylogenetic relationship of 636 individual Tibetan sheep from fifteen populations were assessed using 642 complete sequences of the mitochondrial DNA D-loop. Samples were collected from the Qinghai-Tibetan Plateau area in China, and reference data were obtained from the six reference breed sequences available in GenBank. The length of the sequences varied considerably, between 1031 and 1259 bp. The haplotype diversity and nucleotide diversity were 0.992±0.010 and 0.019±0.001, respectively. The average number of nucleotide differences was 19.635. The mean nucleotide composition of the 350 haplotypes was 32.961% A, 29.708% T, 22.892% C, 14.439% G, 62.669% A+T, and 37.331% G+C. Phylogenetic analysis showed that all four previously defined haplogroups (A, B, C, and D) were found in the 636 individuals of the fifteen Tibetan sheep populations but that only the D haplogroup was found in Linzhou sheep. Further, the clustering analysis divided the fifteen Tibetan sheep populations into at least two clusters. The estimation of the demographic parameters from the mismatch analyses showed that haplogroups A, B, and C had at least one demographic expansion in Tibetan sheep. These results contribute to the knowledge of Tibetan sheep populations and will help inform future conservation programs about the Tibetan sheep native to the Qinghai-Tibetan Plateau.</p></div

The Mismatch Distribution of Complete Dataset of Four Lineages of the Fifteen Tibetan Sheep Populations.

<p>The results were summarized in four lineages of the mtDNA types of the fifteen Tibetan sheep populations on the Qinghai-Tibetan Plateau areas showed that there was at least one demographic expansion.</p

Sampling information for the 15 indigenous Tibetan sheep populations.

<p>Sampling information for the 15 indigenous Tibetan sheep populations.</p

The ME phylogenetic tree of 350 haplotypes.

<p>The ME phylogenetic tree show that the 350 haplotypes and 636 sequences of Tibetan sheep populations and six reference breeds fall into five distinct clusters: haplogroup A, haplogroup B, haplogroup C, haplogroup D (Hap 259 of LZ 03) and haplogroup E (<i>Omusimon</i> and <i>Ovignei</i>), respectively. Haplogroups for individuals defined by the entire haplotypes are shaded in blue (haplogroup A), green (haplogroup B), and red (haplogroup C).</p

Genetic diversity indices of fifteen Tibetan sheep populations.

<p>Genetic diversity indices of fifteen Tibetan sheep populations.</p