Equity evaluation of urban park system: a case study of Xiamen, China

Urban parks play a distinctive and important role in satisfying residents’ demands on leisure and recreation, and thus have become the focus of research in the field of urban planning and sustainable development. This paper used equity as indicator to combine both the supply and demand sides of urban park service. Taking Xiamen as the study case, the relationship between spatial distribution of population and park services was analyzed. The results show that while population density has a significant spatial relationship with urban park service level at the city scale, Xiamen has the problem of neglecting the equity of urban park service between people and regions within the city. The proposed approach builds up the linkage between urban park service and urban population in order to evaluate the performance of urban park. Although the mechanism remains to be discussed, this study provides a useful auxiliary tool for constructing a guideline for urban green space planning, since urban park is increasingly seen as a kind of restricted public resource and ensuring its equity should be an important task for city mangers

Asymmetric double-winged multi-view clustering network for exploring Diverse and Consistent Information

In unsupervised scenarios, deep contrastive multi-view clustering (DCMVC) is becoming a hot research spot, which aims to mine the potential relationships between different views. Most existing DCMVC algorithms focus on exploring the consistency information for the deep semantic features, while ignoring the diverse information on shallow features. To fill this gap, we propose a novel multi-view clustering network termed CodingNet to explore the diverse and consistent information simultaneously in this paper. Specifically, instead of utilizing the conventional auto-encoder, we design an asymmetric structure network to extract shallow and deep features separately. Then, by aligning the similarity matrix on the shallow feature to the zero matrix, we ensure the diversity for the shallow features, thus offering a better description of multi-view data. Moreover, we propose a dual contrastive mechanism that maintains consistency for deep features at both view-feature and pseudo-label levels. Our framework's efficacy is validated through extensive experiments on six widely used benchmark datasets, outperforming most state-of-the-art multi-view clustering algorithms

Attribute Graph Clustering via Learnable Augmentation

Contrastive deep graph clustering (CDGC) utilizes contrastive learning to group nodes into different clusters. Better augmentation techniques benefit the quality of the contrastive samples, thus being one of key factors to improve performance. However, the augmentation samples in existing methods are always predefined by human experiences, and agnostic from the downstream task clustering, thus leading to high human resource costs and poor performance. To this end, we propose an Attribute Graph Clustering method via Learnable Augmentation (\textbf{AGCLA}), which introduces learnable augmentors for high-quality and suitable augmented samples for CDGC. Specifically, we design two learnable augmentors for attribute and structure information, respectively. Besides, two refinement matrices, including the high-confidence pseudo-label matrix and the cross-view sample similarity matrix, are generated to improve the reliability of the learned affinity matrix. During the training procedure, we notice that there exist differences between the optimization goals for training learnable augmentors and contrastive learning networks. In other words, we should both guarantee the consistency of the embeddings as well as the diversity of the augmented samples. Thus, an adversarial learning mechanism is designed in our method. Moreover, a two-stage training strategy is leveraged for the high-confidence refinement matrices. Extensive experimental results demonstrate the effectiveness of AGCLA on six benchmark datasets

Association Test Based on SNP Set: Logistic Kernel Machine Based Test vs. Principal Component Analysis

GWAS has facilitated greatly the discovery of risk SNPs associated with complex diseases. Traditional methods analyze SNP individually and are limited by low power and reproducibility since correction for multiple comparisons is necessary. Several methods have been proposed based on grouping SNPs into SNP sets using biological knowledge and/or genomic features. In this article, we compare the linear kernel machine based test (LKM) and principal components analysis based approach (PCA) using simulated datasets under the scenarios of 0 to 3 causal SNPs, as well as simple and complex linkage disequilibrium (LD) structures of the simulated regions. Our simulation study demonstrates that both LKM and PCA can control the type I error at the significance level of 0.05. If the causal SNP is in strong LD with the genotyped SNPs, both the PCA with a small number of principal components (PCs) and the LKM with kernel of linear or identical-by-state function are valid tests. However, if the LD structure is complex, such as several LD blocks in the SNP set, or when the causal SNP is not in the LD block in which most of the genotyped SNPs reside, more PCs should be included to capture the information of the causal SNP. Simulation studies also demonstrate the ability of LKM and PCA to combine information from multiple causal SNPs and to provide increased power over individual SNP analysis. We also apply LKM and PCA to analyze two SNP sets extracted from an actual GWAS dataset on non-small cell lung cancer

Advancing Real-time Pandemic Forecasting Using Large Language Models: A COVID-19 Case Study

Forecasting the short-term spread of an ongoing disease outbreak is a formidable challenge due to the complexity of contributing factors, some of which can be characterized through interlinked, multi-modality variables such as epidemiological time series data, viral biology, population demographics, and the intersection of public policy and human behavior. Existing forecasting model frameworks struggle with the multifaceted nature of relevant data and robust results translation, which hinders their performances and the provision of actionable insights for public health decision-makers. Our work introduces PandemicLLM, a novel framework with multi-modal Large Language Models (LLMs) that reformulates real-time forecasting of disease spread as a text reasoning problem, with the ability to incorporate real-time, complex, non-numerical information that previously unattainable in traditional forecasting models. This approach, through a unique AI-human cooperative prompt design and time series representation learning, encodes multi-modal data for LLMs. The model is applied to the COVID-19 pandemic, and trained to utilize textual public health policies, genomic surveillance, spatial, and epidemiological time series data, and is subsequently tested across all 50 states of the U.S. Empirically, PandemicLLM is shown to be a high-performing pandemic forecasting framework that effectively captures the impact of emerging variants and can provide timely and accurate predictions. The proposed PandemicLLM opens avenues for incorporating various pandemic-related data in heterogeneous formats and exhibits performance benefits over existing models. This study illuminates the potential of adapting LLMs and representation learning to enhance pandemic forecasting, illustrating how AI innovations can strengthen pandemic responses and crisis management in the future.Comment: 35 pages, 10 figure

Dink-Net: Neural Clustering on Large Graphs

Deep graph clustering, which aims to group the nodes of a graph into disjoint clusters with deep neural networks, has achieved promising progress in recent years. However, the existing methods fail to scale to the large graph with million nodes. To solve this problem, a scalable deep graph clustering method (Dink-Net) is proposed with the idea of dilation and shrink. Firstly, by discriminating nodes, whether being corrupted by augmentations, representations are learned in a self-supervised manner. Meanwhile, the cluster centres are initialized as learnable neural parameters. Subsequently, the clustering distribution is optimized by minimizing the proposed cluster dilation loss and cluster shrink loss in an adversarial manner. By these settings, we unify the two-step clustering, i.e., representation learning and clustering optimization, into an end-to-end framework, guiding the network to learn clustering-friendly features. Besides, Dink-Net scales well to large graphs since the designed loss functions adopt the mini-batch data to optimize the clustering distribution even without performance drops. Both experimental results and theoretical analyses demonstrate the superiority of our method. Compared to the runner-up, Dink-Net achieves 9.62% NMI improvement on the ogbn-papers100M dataset with 111 million nodes and 1.6 billion edges. The source code is released at https://github.com/yueliu1999/Dink-Net. Besides, a collection (papers, codes, and datasets) of deep graph clustering is shared at https://github.com/yueliu1999/Awesome-Deep-Graph-Clustering.Comment: 19 pages, 5 figure

Self-Supervised Temporal Graph learning with Temporal and Structural Intensity Alignment

Temporal graph learning aims to generate high-quality representations for graph-based tasks along with dynamic information, which has recently drawn increasing attention. Unlike the static graph, a temporal graph is usually organized in the form of node interaction sequences over continuous time instead of an adjacency matrix. Most temporal graph learning methods model current interactions by combining historical information over time. However, such methods merely consider the first-order temporal information while ignoring the important high-order structural information, leading to sub-optimal performance. To solve this issue, by extracting both temporal and structural information to learn more informative node representations, we propose a self-supervised method termed S2T for temporal graph learning. Note that the first-order temporal information and the high-order structural information are combined in different ways by the initial node representations to calculate two conditional intensities, respectively. Then the alignment loss is introduced to optimize the node representations to be more informative by narrowing the gap between the two intensities. Concretely, besides modeling temporal information using historical neighbor sequences, we further consider the structural information from both local and global levels. At the local level, we generate structural intensity by aggregating features from the high-order neighbor sequences. At the global level, a global representation is generated based on all nodes to adjust the structural intensity according to the active statuses on different nodes. Extensive experiments demonstrate that the proposed method S2T achieves at most 10.13% performance improvement compared with the state-of-the-art competitors on several datasets