Measurement of atmospheric neutrino oscillations with very large volume neutrino telescopes

Neutrino oscillations have been probed during the last few decades using multiple neutrino sources and experimental set-ups. In the recent years, very large volume neutrino telescopes have started contributing to the field. First ANTARES and then IceCube have relied on large and sparsely instrumented volumes to observe atmospheric neutrinos for combinations of baselines and energies inaccessible to other experiments. Using this advantage, the latest result from IceCube starts approaching the precision of other established technologies, and is paving the way for future detectors, such as ORCA and PINGU. These new projects seek to provide better measurements of neutrino oscillation parameters, and eventually determine the neutrino mass ordering. The results from running experiments and the potential from proposed projects are discussed in this review, emphasizing the experimental challenges involved in the measurements.Comment: Review paper to appear in the special issue "Neutrino Masses and Oscillations" of Advances in High Energy Physics (accepted); 22 pages, 24 figure

On the use of machine learning algorithms in the measurement of stellar magnetic fields

Regression methods based in Machine Learning Algorithms (MLA) have become an important tool for data analysis in many different disciplines. In this work, we use MLA in an astrophysical context; our goal is to measure the mean longitudinal magnetic field in stars (H_ eff) from polarized spectra of high resolution, through the inversion of the so-called multi-line profiles. Using synthetic data, we tested the performance of our technique considering different noise levels: In an ideal scenario of noise-free multi-line profiles, the inversion results are excellent; however, the accuracy of the inversions diminish considerably when noise is taken into account. In consequence, we propose a data pre-process in order to reduce the noise impact, which consists in a denoising profile process combined with an iterative inversion methodology. Applying this data pre-process, we have found a considerable improvement of the inversions results, allowing to estimate the errors associated to the measurements of stellar magnetic fields at different noise levels. We have successfully applied our data analysis technique to two different stars, attaining by first time the measurement of H_eff from multi-line profiles beyond the condition of line autosimilarity assumed by other techniques.Comment: Accepted for publication in A&

Design, manufacturing and set-up tests of a wave energy converter prototype in the context of the European Project LIFE-Demowave

LifeDemoWave Project is a real case of development of a R&D project, from the initial idea to the final construction and installation of a prototype for testing in operational environment. This project was born from an idea of the main researcher of the CIMA Group that finally led to two patents of two wave generation systems. Based on these patents, CIMA sought different ways for funding with the aim of developing prototypes with a high TRL and being able to test the operating principle of the patented systems. Finally, funding was obtained through the Life Program of the European Union and in collaboration with five other partners. The main objective of the LifeDemoWave project (http://www. life-demowave.eu/en/) is the demonstration of the feasibility of the use of wave power for electric generation in order to reduce greenhouse gases' emissions. For demonstration purposes, prototypes of wave power generation, reproducible and scalable at high level, are installed in the Galician coast. LifeDemoWave project considers, as well as its design and implementation, the environmental impact in the installation areas and its effect on biodiversity.Peer Reviewe

Spontaneous circadian rhythms in a cold-Adapted natural isolate of Aureobasidium pullulans

Indexación: Scopus.Circadian systems enable organisms to synchronize their physiology to daily and seasonal environmental changes relying on endogenous pacemakers that oscillate with a period close to 24 h even in the absence of external timing cues. The oscillations are achieved by intracellular transcriptional/translational feedback loops thoroughly characterized for many organisms, but still little is known about the presence and characteristics of circadian clocks in fungi other than Neurospora crassa. We sought to characterize the circadian system of a natural isolate of Aureobasidium pullulans, a cold-Adapted yeast bearing great biotechnological potential. A. pullulans formed daily concentric rings that were synchronized by light/dark cycles and were also formed in constant darkness with a period of 24.5 h. Moreover, these rhythms were temperature compensated, as evidenced by experiments conducted at temperatures as low as 10 °C. Finally, the expression of clock-essential genes, frequency, white collar-1, white collar-2 and vivid was confirmed. In summary, our results indicate the existence of a functional circadian clock in A. pullulans, capable of sustaining rhythms at very low temperatures and, based on the presence of conserved clock-gene homologues, suggest a molecular and functional relationship to well-described circadian systems.https://www.nature.com/articles/s41598-017-14085-

Comparative pan-genome analysis of Piscirickettsia salmonis reveals genomic divergences within genogroups

Indexación: Scopus.Piscirickettsia salmonis is the etiological agent of salmonid rickettsial septicemia, a disease that seriously affects the salmonid industry. Despite efforts to genomically characterize P. salmonis, functional information on the life cycle, pathogenesis mechanisms, diagnosis, treatment, and control of this fish pathogen remain lacking. To address this knowledge gap, the present study conducted an in silico pan-genome analysis of 19 P. salmonis strains from distinct geographic locations and genogroups. Results revealed an expected open pan-genome of 3,463 genes and a core-genome of 1,732 genes. Two marked genogroups were identified, as confirmed by phylogenetic and phylogenomic relationships to the LF-89 and EM-90 reference strains, as well as by assessments of genomic structures. Different structural configurations were found for the six identified copies of the ribosomal operon in the P. salmonis genome, indicating translocation throughout the genetic material. Chromosomal divergences in genomic localization and quantity of genetic cassettes were also found for the Dot/Icm type IVB secretion system. To determine divergences between core-genomes, additional pan-genome descriptions were compiled for the so-termed LF and EM genogroups. Open pan-genomes composed of 2,924 and 2,778 genes and core-genomes composed of 2,170 and 2,228 genes were respectively found for the LF and EM genogroups. The core-genomes were functionally annotated using the Gene Ontology, KEGG, and Virulence Factor databases, revealing the presence of several shared groups of genes related to basic function of intracellular survival and bacterial pathogenesis. Additionally, the specific pan-genomes for the LF and EM genogroups were defined, resulting in the identification of 148 and 273 exclusive proteins, respectively. Notably, specific virulence factors linked to adherence, colonization, invasion factors, and endotoxins were established. The obtained data suggest that these genes could be directly associated with inter-genogroup differences in pathogenesis and host-pathogen interactions, information that could be useful in designing novel strategies for diagnosing and controlling P. salmonis infection. © 2017 Nourdin-Galindo, Sánchez, Molina, Espinoza-Rojas, Oliver, Ruiz, Vargas-Chacoff, Cárcamo, Figueroa, Mancilla, Maracaja-Coutinho and Yañez.https://www.frontiersin.org/articles/10.3389/fcimb.2017.00459/ful

Population genetics of ectoparasitic mites Varroa spp. in Eastern and Western honey bees.

Host shifts of parasites are often causing devastating effects in the new hosts. The Varroa genus is known for a lineage of Varroa destructor that shifted to the Western honey bee, Apis mellifera, with disastrous effects on wild populations and the beekeeping industry. Despite this, the biology of Varroa spp. remains poorly understood in its native distribution range, where it naturally parasitizes the Eastern honey bee, Apis cerana. Here, we combined mitochondrial and nuclear DNA analyses with the assessment of mite reproduction to determine the population structure and host specificity of V. destructor and Varroa jacobsonii in Thailand, where both hosts and several Varroa species and haplotypes are sympatric. Our data confirm previously described mite haplogroups, and show three novel haplotypes. Multiple infestations of single host colonies by both mite species and introgression of alleles between V. destructor and V. jacobsonii suggest that hybridization occurs between the two species. Our results indicate that host specificity and population genetic structure in the genus Varroa is more labile than previously thought. The ability of the host shifted V. destructor haplotype to spillback to A. cerana and to hybridize with V. jacobsonii could threaten honey bee populations of Asia and beyond

Consideraciones biogenéticas sobre los neolignanos presentes en la corteza de mezilaurus itauba (lauraceae)

La biogénesis de 9 neolignanos extraídos de la corteza de Mezilaurus itauba (Meissn) Tauber ex Mez (Lauraceae) puede ser explicada por acoplamiento oxidativo de radicales provenientes de propenil y alilfenoles. En esta planta isoeugenol y eugenol parecen ser metabolizados a través de un acoplamiento oxidativo para dar un intermediario quinonametfdeo el cual por adición de hidroxilo produce neolignanos benzofuránicos y bicHo (3,2.1) octánicos. Un neolignano biciclooctánico puede provenir de isoeugunol y 3,4-dlhidroxialilbenceno. La presencia de neolignanos benzofuránicos en M. itauba es importante porque confirma la ocurrencia natural de una secuencia de reacciones racionalizadas mecanlsticamente por reordenamiento de Cope, retro-Clalsen y Claisen

Three strongly correlated charged bosons in a one-dimensional harmonic trap: natural orbital occupancies

We study a one-dimensional system composed of three charged bosons confined in an external harmonic potential. More precisely, we investigate the ground-state correlation properties of the system, paying particular attention to the strong-interaction limit. We explain for the first time the nature of the degeneracies appearing in this limit in the spectrum of the reduced density matrix. An explicit representation of the asymptotic natural orbitals and their occupancies is given in terms of some integral equations.Comment: 6 pages, 4 figures, To appear in European Physical Journal