High-resolution upper Pliocene to Pleistocene calcareous nannofossil biostratigraphy in Ocean Drilling Program Hole 1146A in the South China Sea

We established a high-resolution calcareous nannofossil biostratigraphy for the late Pliocene–Pleistocene by analyzing a 242 m-thick, continuous sedimentary succession from Ocean Drilling Program Site 1146, Hole A, in the South China Sea (SCS). A total of 14 calcareous nannofossil datums were detected in the SCS succession. They are, in descending order: first occurrence (FO) of Emiliania huxleyi, last occurrence (LO) of Pseudoemiliania lacunosa, LO of Reticulofenestra asanoi, FO of Gephyrocapsa parallela, FO of R. asanoi, LO of large Gephyrocapsa spp., FO of large G. spp., FO of Gephyrocapsa oceanica, FO of Gephyrocapsa caribbeanica, LO of Calcidiscus macintyrei, LO of Discoaster brouweri, LO of Discoaster pentaradiatus, LO of Discoaster surculus, and LO of Discoaster tamalis. The FO of E. huxleyi was not precisely detected due to poor preservation and dissolution of nannofossils in the underlying strata. We refined the previous calcareous nannofossil biostratigraphy in the SCS by identifying Gephyrocapsa species and four evolutionary extinction events of the genus Discoaster. The proposed calcareous nannofossil biostratigraphy correlates with those reported in other terrestrial and marine areas/sites and global benthic foraminiferal δ18O records. The age–depth curves based on nannofossil biostratigraphy indicate a significant increase in the sedimentation rates at the LO of R. asanoi (0.91–0.85 Ma). The timing of this increase corresponds to reef expansion in the Ryukyu Islands linked to a stepwise increase in Kuroshio Current intensity. This timing is broadly coeval with a sea surface temperature increase of ∼2°C in the northwestern Pacific due to expansion of the Western Pacific Warm Pool towards the north and south subtropical regions. This can be explained by increased weathering and erosion of terrestrial areas in glacial periods and increased rainfall causing higher sediment transport in interglacial periods, which were both linked to Middle Pleistocene Transition-related climatic changes

PubMed-supported clinical term weighting approach for improving inter-patient similarity measure in diagnosis prediction

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Contribution of the cyclic nucleotide gated channel subunit, CNG-3, to olfactory plasticity in Caenorhabditis elegans.

In Caenorhabditis elegans, the AWC neurons are thought to deploy a cGMP signaling cascade in the detection of and response to AWC sensed odors. Prolonged exposure to an AWC sensed odor in the absence of food leads to reversible decreases in the animal's attraction to that odor. This adaptation exhibits two stages referred to as short-term and long-term adaptation. Previously, the protein kinase G (PKG), EGL-4/PKG-1, was shown necessary for both stages of adaptation and phosphorylation of its target, the beta-type cyclic nucleotide gated (CNG) channel subunit, TAX-2, was implicated in the short term stage. Here we uncover a novel role for the CNG channel subunit, CNG-3, in short term adaptation. We demonstrate that CNG-3 is required in the AWC for adaptation to short (thirty minute) exposures of odor, and contains a candidate PKG phosphorylation site required to tune odor sensitivity. We also provide in vivo data suggesting that CNG-3 forms a complex with both TAX-2 and TAX-4 CNG channel subunits in AWC. Finally, we examine the physiology of different CNG channel subunit combinations

BRISC—An Open Source Pulmonary Nodule Image Retrieval Framework

We have created a content-based image retrieval framework for computed tomography images of pulmonary nodules. When presented with a nodule image, the system retrieves images of similar nodules from a collection prepared by the Lung Image Database Consortium (LIDC). The system (1) extracts images of individual nodules from the LIDC collection based on LIDC expert annotations, (2) stores the extracted data in a flat XML database, (3) calculates a set of quantitative descriptors for each nodule that provide a high-level characterization of its texture, and (4) uses various measures to determine the similarity of two nodules and perform queries on a selected query nodule. Using our framework, we compared three feature extraction methods: Haralick co-occurrence, Gabor filters, and Markov random fields. Gabor and Markov descriptors perform better at retrieving similar nodules than do Haralick co-occurrence techniques, with best retrieval precisions in excess of 88%. Because the software we have developed and the reference images are both open source and publicly available they may be incorporated into both commercial and academic imaging workstations and extended by others in their research

Expression of nuclear retinoid receptors in normal, premalignant and malignant gastric tissues determined by in situ hybridization

[[abstract]]Retinoids exhibit multiple functions through interaction with nuclear retinoid receptors and have growth-suppressive activity on gastric cancer cells. To better understand the roles of nuclear retinoid receptors during gastric carcinogenesis, we have used in situ hybridization to investigate expression of retinoic acid receptors (RARs) and retinoid x receptors (RXRs) in premalignant and malignant formalin-fixed paraffin-embedded gastric tissues. Histological sections of eight normal, 17 distal normal and nine gastric cancer tissues were hybridized with non-radioactive RNA probes for subtypes of RAR and RXR. Expression of RARα, RARβ, RARγ, RXRα and RXRβ was found in most cell types in gastric mucosa tissues from normal individuals as well as in distal normal tissues from cancer patients. Expression of RARα and RARβ were found in three and seven cancer tissues, respectively, and levels of RXRα mRNA were significantly decreased in poorly differentiated cancer tissues. Among the five investigated nuclear retinoid receptors, only expression of RARα mRNA was significantly decreased in intestinal metaplasia, dysplasia and cancer tissues when compared to adjacent normal tissues. In conclusion, normal gastric mucosa expressed both RARs and RXRs, which supports the physiological role of retinoic acid on normal gastric mucosa. The decrease in RARα expression in premalignant and malignant gastric tissues suggests a significant role of RARα during gastric carcinogenesis.[[notice]]補正完畢[[incitationindex]]SC