Enumerative geometry of elliptic curves on toric surfaces

We establish the equality of classical and tropical curve counts for elliptic curves on toric surfaces with fixed j-invariant, refining results of Mikhalkin and Nishinou--Siebert. As an application, we determine a formula for such counts on ℙ2 and all Hirzebruch surfaces. This formula relates the count of elliptic curves with the number of rational curves on the surface satisfying a small number of tangency conditions with the toric boundary. Furthermore, the combinatorial tropical multiplicities of Kerber and Markwig for counts in ℙ2 are derived and explained algebro-geometrically, using Berkovich geometry and logarithmic Gromov--Witten theory. As a consequence, a new proof of Pandharipande's formula for counts of elliptic curves in ℙ2 with fixed j-invariant is obtained.PostprintPeer reviewe

Extensional viscosity of copper nanowire suspensions in an aqueous polymer solution

Suspensions of copper nanowires are emerging as new electronic inks for next-generation flexible electronics. Using a novel surface acoustic wave driven extensional flow technique we are able to perform currently lacking analysis of these suspensions and their complex buffer. We observe extensional viscosities from 3 mPa$\cdot$s (1 mPa$\cdot$s shear viscosity) to 37.2 Pa$\cdot$s via changes in the suspension concentration, thus capturing low viscosities that have been historically very challenging to measure. These changes equate to an increase in the relative extensional viscosity of nearly 12,200 times at a volume fraction of just 0.027. We also find that interactions between the wires and the necessary polymer additive affect the rheology strongly. Polymer-induced elasticity shows a reduction as the buffer relaxation time falls from 819 to 59 $\mu$s above a critical particle concentration. The results and technique presented here should aid in the future formulation of these promising nanowire suspensions and their efficient application as inks and coatings.Comment: 7 pages, 5 figures, under review for Soft Matter RS

Motility induced changes in viscosity of suspensions of swimming microbes in extensional flows

Suspensions of motile cells are model systems for understanding the unique mechanical properties of living materials which often consist of ensembles of self-propelled particles. We present here a quantitative comparison of theory against experiment for the rheology of such suspensions. The influence of motility on viscosities of cell suspensions is studied using a novel acoustically-driven microfluidic capillary-breakup extensional rheometer. Motility increases the extensional viscosity of suspensions of algal pullers, but decreases it in the case of bacterial or sperm pushers. A recent model [Saintillan, Phys. Rev. E, 2010, 81:56307] for dilute active suspensions is extended to obtain predictions for higher concentrations, after independently obtaining parameters such as swimming speeds and diffusivities. We show that details of body and flagellar shape can significantly determine macroscale rheological behaviour.Comment: 12 pages, 1 appendix, 7 figures, submitted to Soft Matter - under revie

Regulation of Serum Response Factor and Adiponectin by PPARγ Agonist Docosahexaenoic Acid

Recent studies indicate that significant health benefits involving the regulation of signaling proteins result from the consumption of omega-3 polyunsaturated fatty acids (ω-3 PUFAs). Serum response factor (SRF) is involved in transcriptional regulation of muscle growth and differentiation. SRF levels are increased in the aging heart muscle. It has not been examined whether SRF is made by adipocytes and whether SRF secretion by adipocytes is modulated by PPARγ agonist DHA. Adiponectin is made exclusively by adipocytes. We and others have previously reported that PUFAs such as DHA increase adiponectin levels and secretion in adipocytes. Here we show that DHA downregulates SRF with a simultaneous upregulation of adiponectin and that both these responses are reversible by PPARγ antagonist. Furthermore, there appears to be a direct relationship between DHA exposure and increased levels of membrane-associated high-density adiponectin, as well as lower levels of membrane-associated SRF. Thus, we find that the levels of SRF and adiponectin are inversely related in response to treatment with PPARγ agonist DHA. Decreased levels of SRF along with increase in membrane-associated adiponectin could in part mediate the health benefits of DHA

InCoB2010 - 9thInternational Conference on Bioinformatics at Tokyo, Japan, September 26-28, 2010

10.1186/1471-2105-11-S7-S1BMC Bioinformatics11SUPPL. 7-BBMI

Active robotic training improves locomotor function in a stroke survivor

Abstract Background Clinical outcomes after robotic training are often not superior to conventional therapy. One key factor responsible for this is the use of control strategies that provide substantial guidance. This strategy not only leads to a reduction in volitional physical effort, but also interferes with motor relearning. Methods We tested the feasibility of a novel training approach (active robotic training) using a powered gait orthosis (Lokomat) in mitigating post-stroke gait impairments of a 52-year-old male stroke survivor. This gait training paradigm combined patient-cooperative robot-aided walking with a target-tracking task. The training lasted for 4-weeks (12 visits, 3 × per week). The subject’s neuromotor performance and recovery were evaluated using biomechanical, neuromuscular and clinical measures recorded at various time-points (pre-training, post-training, and 6-weeks after training). Results Active robotic training resulted in considerable increase in target-tracking accuracy and reduction in the kinematic variability of ankle trajectory during robot-aided treadmill walking. These improvements also transferred to overground walking as characterized by larger propulsive forces and more symmetric ground reaction forces (GRFs). Training also resulted in improvements in muscle coordination, which resembled patterns observed in healthy controls. These changes were accompanied by a reduction in motor cortical excitability (MCE) of the vastus medialis, medial hamstrings, and gluteus medius muscles during treadmill walking. Importantly, active robotic training resulted in substantial improvements in several standard clinical and functional parameters. These improvements persisted during the follow-up evaluation at 6 weeks. Conclusions The results indicate that active robotic training appears to be a promising way of facilitating gait and physical function in moderately impaired stroke survivors.http://deepblue.lib.umich.edu/bitstream/2027.42/112853/1/12984_2011_Article_375.pd

Solubilization of silica: synthesis, characterization and study of penta-coordinated pyridine N-oxide silicon complexes

In an effort to design agents that could solubilize silica in water, under ambient conditions and pH, as takes place in nature, novel zwitterionic, penta-oxo-coordinated silicon compounds with siliconate cores have been prepared from 4-substituted pyridine N-oxides (H, OMe, morpholino, NO2) as donor ligands, their structures established by 1H, 13C and MS, and the coordination number of silicon, by 29Si NMR. The formation of complexes from pyridine N-oxides is noteworthy since they arise from interaction with a weakly nucleophilic oxygen centre. The ability of the pyridine N-oxides to enhance the solubilization of silica in water has been experimentally demonstrated. Possible rationalization of this observation on the basis of O → Si coordination via the oxygen atom of pyridine N-oxide is suggested

Emerging strengths in Asia Pacific bioinformatics

The 2008 annual conference of the Asia Pacific Bioinformatics Network (APBioNet), Asia's oldest bioinformatics organisation set up in 1998, was organized as the 7th International Conference on Bioinformatics (InCoB), jointly with the Bioinformatics and Systems Biology in Taiwan (BIT 2008) Conference, Oct. 20–23, 2008 at Taipei, Taiwan. Besides bringing together scientists from the field of bioinformatics in this region, InCoB is actively involving researchers from the area of systems biology, to facilitate greater synergy between these two groups. Marking the 10th Anniversary of APBioNet, this InCoB 2008 meeting followed on from a series of successful annual events in Bangkok (Thailand), Penang (Malaysia), Auckland (New Zealand), Busan (South Korea), New Delhi (India) and Hong Kong. Additionally, tutorials and the Workshop on Education in Bioinformatics and Computational Biology (WEBCB) immediately prior to the 20th Federation of Asian and Oceanian Biochemists and Molecular Biologists (FAOBMB) Taipei Conference provided ample opportunity for inducting mainstream biochemists and molecular biologists from the region into a greater level of awareness of the importance of bioinformatics in their craft. In this editorial, we provide a brief overview of the peer-reviewed manuscripts accepted for publication herein, grouped into thematic areas. As the regional research expertise in bioinformatics matures, the papers fall into thematic areas, illustrating the specific contributions made by APBioNet to global bioinformatics efforts

Cellular kinetics: A clinical and computational review of CAR-T cell pharmacology

To the extent that pharmacokinetics influence the effectiveness of nonliving therapeutics, so too do cellular kinetics influence the efficacy of Chimeric Antigen Receptor (CAR) -T cell therapy. Like conventional therapeutics, CAR-T cell therapies undergo a distribution phase upon administration. Unlike other therapeutics, however, this distribution phase is followed by subsequent phases of expansion, contraction, and persistence. The magnitude and duration of these phases unequivocally influence clinical outcomes. Furthermore, the “pharmacodynamics” of CAR-T cells is truly dynamic, as cells can rapidly become exhausted and lose their therapeutic efficacy. Mathematical models are among the translational tools commonly applied to assess, characterize, and predict the complex cellular kinetics and dynamics of CAR-T cells. Here, we provide a focused review of the cellular kinetics of CAR-T cells, the mechanisms underpinning their complexity, and the mathematical modeling approaches used to interrogate them

Predicting growth and development of pigeonpea: biomass accumulation and partitioning

Examining physiological relationships that quantify the processes of interception of radiation and biomass accumulation and partitioning provide one avenue for understanding limits to pigeon pea productivity. The radiation extinction coefficient (k), radiation use efficiency (RUE), partitioning of biomass between leaf and stem before flowering, and the rate of linear increase in harvest index (HI) during pod-filling were determined for nine cultivars in water and nutrient non-limiting conditions at ICRISAT Centre, Patancheru, Andhra Pradesh, India. The nine cultivars comprised three each from the cultivar duration classes extra-short (100 days to maturity), short (115 days) and medium (170 days). Values of k and RUE were consistent across duration groups, with mean values of 0.53 and ca. 0.9 g MJ-1, respectively. RUE remained at its maximum value almost until maturity. Partitioning between leaf and stem prior to flowering was also consistent across groups, in the ratio of 1:1.03 to 1:1.14. The rate of linear increase in HI and final HI varied across groups, with lower rates of partitioning to grain and final HI in the later maturing groups. When adjusted for fallen leaf, the HI increase was ca. 0.08, 0.075 and 0.04 per day, and maximum HI was ca. 0.35, 0.32 and 0.19 for extra-short, short and medium-duration groups, respectively. The association of lower HI increase with indeterminate growth provides a convenient framework to simulate concurrent reproductive and vegetative growth during pod-filling