Direct observation of nucleation in the bulk of an opaque sample

Remarkably little is known about the physical phenomena leading to nucleation of new perfect crystals within deformed metals during annealing, in particular how and where volumes with nearly perfect lattices evolve from structures filled with dislocations, and how local variations at the micrometer length scale affect this nucleation process. We present here the first experimental measurements that relate directly nucleation of recrystallization to the local deformation microstructure in the bulk of a sample of cold rolled aluminum, further deformed locally by a hardness indentation. White beam differential aperture X-ray microscopy is used for the measurements, allowing us to map a selected gauge volume in the bulk of the sample in the deformed state, then anneal the sample and map the exact same gauge volume in the annealed state. It is found that nuclei develop at sites of high stored energy and they have crystallographic orientations from those present in the deformed state. Accordingly we suggest that for each nucleus the embryonic volume arises from a structural element contained within the voxels identified with the same orientation. Possible nucleation mechanisms are discussed and the growth potentials of the nuclei are also analyzed and discussed

Anomalous Warm Temperatures Recorded Using Tree Rings in the Headwater of the Jinsha River during the Little Ice Age

As a feature of global warming, climate change has been a severe issue in the 21st century. A more comprehensive reconstruction is necessary in the climate assessment process, considering the heterogeneity of climate change scenarios across various meteorological elements and seasons. To better comprehend the change in minimum temperature in winter in the Jinsha River Basin (China), we built a standard tree-ring chronology from Picea likiangensis var. balfouri and reconstructed the regional mean minimum temperature of the winter half-years from 1606 to 2016. This reconstruction provides a comprehensive overview of the changes in winter temperature over multiple centuries. During the last 411 years, the regional climate has undergone seven warm periods and six cold periods. The reconstructed temperature sensitively captures the climate warming that emerged at the end of the 20th century. Surprisingly, during 1650–1750, the lowest winter temperature within the research area was about 0.44 °C higher than that in the 20th century, which differs significantly from the concept of the “cooler” Little Ice Age during this period. This result is validated by the temperature results reconstructed from other tree-ring data from nearby areas, confirming the credibility of the reconstruction. The Ensemble Empirical Mode Decomposition method (EEMD) was adopted to decompose the reconstructed sequence into oscillations of different frequency domains. The decomposition results indicate that the temperature variations in this region exhibit significant periodic changes with quasi-3a, quasi-7a, 15.5-16.8a, 29.4-32.9a, and quasi-82a cycles. Factors like El Niño–Southern Oscillation (ENSO), Pacific Decadal Oscillation (PDO), and solar activity, along with Atlantic Multidecadal Oscillation (AMO), may be important driving forces. To reconstruct this climate, this study integrates the results of three machine learning algorithms and traditional linear regression methods. This novel reconstruction method can provide valuable insights for related research endeavors. Furthermore, other global climate change scenarios can be explored through additional proxy reconstructions

Global dissection of alternative splicing uncovers transcriptional diversity in tissues and associates with the flavonoid pathway in tea plant (Camellia sinensis)

Abstract Background Alternative splicing (AS) regulates mRNA at the post-transcriptional level to change gene function in organisms. However, little is known about the AS and its roles in tea plant (Camellia sinensis), widely cultivated for making a popular beverage tea. Results In our study, the AS landscape and dynamics were characterized in eight tissues (bud, young leaf, summer mature leaf, winter old leaf, stem, root, flower, fruit) of tea plant by Illumina RNA-Seq and confirmed by Iso-Seq. The most abundant AS (~ 20%) was intron retention and involved in RNA processes. The some alternative splicings were found to be tissue specific in stem and root etc. Thirteen co-expressed modules of AS transcripts were identified, which revealed a similar pattern between the bud and young leaves as well as a distinct pattern between seasons. AS events of structural genes including anthocyanidin reductase and MYB transcription factors were involved in biosynthesis of flavonoid, especially in vegetative tissues. The AS isoforms rather than the full-length ones were the major transcripts involved in flavonoid synthesis pathway, and is positively correlated with the catechins content conferring the tea taste. We propose that the AS is an important functional mechanism in regulating flavonoid metabolites. Conclusion Our study provides the insight into the AS events underlying tea plant’s uniquely different developmental process and highlights the important contribution and efficacy of alternative splicing regulatory function to biosynthesis of flavonoids

3D characterization of partially recrystallized Al using high resolution diffraction contrast tomography

International audienceSynchrotron diffraction contrast tomography (DCT) is for the first time used to characterize recrystallized grains in partially recrystallized Al. The positions, orientations and 3D shapes of >900 recrystallized grains are reconstructed within a gauge volume. The results are compared with those obtained using electron backscattered diffraction based on a statistical analysis. It is found that recrystallized grains with size larger than 10 μm, corresponding to ~98% of the total recrystallized volume of the sample, are well characterized by DCT. The advantages of DCT for recrystallization studies and new possibilities with DCT on new generation synchrotron sources are discussed

Global dissection of alternative splicing uncovers transcriptional diversity in tissues and associates with the flavonoid pathway in tea plant (Camellia sinensis)

Abstract Background Alternative splicing (AS) regulates mRNA at the post-transcriptional level to change gene function in organisms. However, little is known about the AS and its roles in tea plant (Camellia sinensis), widely cultivated for making a popular beverage tea. Results In our study, the AS landscape and dynamics were characterized in eight tissues (bud, young leaf, summer mature leaf, winter old leaf, stem, root, flower, fruit) of tea plant by Illumina RNA-Seq and confirmed by Iso-Seq. The most abundant AS (~ 20%) was intron retention and involved in RNA processes. The some alternative splicings were found to be tissue specific in stem and root etc. Thirteen co-expressed modules of AS transcripts were identified, which revealed a similar pattern between the bud and young leaves as well as a distinct pattern between seasons. AS events of structural genes including anthocyanidin reductase and MYB transcription factors were involved in biosynthesis of flavonoid, especially in vegetative tissues. The AS isoforms rather than the full-length ones were the major transcripts involved in flavonoid synthesis pathway, and is positively correlated with the catechins content conferring the tea taste. We propose that the AS is an important functional mechanism in regulating flavonoid metabolites. Conclusion Our study provides the insight into the AS events underlying tea plant’s uniquely different developmental process and highlights the important contribution and efficacy of alternative splicing regulatory function to biosynthesis of flavonoids