Volatile Organic Compounds Monitored Online at Three Photochemical Assessment Monitoring Stations in the Pearl River Delta (PRD) Region during Summer 2016: Sources and Emission Areas

Volatile organic compounds (VOCs) were monitored online at three photochemical assessment monitoring stations (MDS, WQS and HGS) in the Pearl River Delta region during the summer of 2016. Measured levels of VOCs at the MDS, WQS and HGS sites were 34.78, 8.54 and 8.47 ppbv, respectively, with aromatics and alkenes as major ozone precursors and aromatics as major precursors to secondary organic aerosol (SOA). The positive matrix factorization (PMF) model revealed that VOCs at the sites mainly came from vehicle exhaust, petrochemical industry, and solvent use. Vehicle exhaust and industrial processes losses contributed most to ozone formation potentials (OFP) of VOCs, while industrial processes losses contributed most to SOA formation potentials of VOCs. Potential source contribution function (PSCF) analysis revealed a north-south distribution for source regions of aromatics occurring at MDS with emission sources in Guangzhou mainly centered in the Guangzhou central districts, and source regions of aromatics at WQS showed an east-west distribution across Huizhou, Dongguan and east of Guangzhou, while that at HGS showed a south-north distribution across Guangzhou, Foshan, Zhaoqing and Yangjiang. This study demonstrates that multi-point high time resolution data can help resolve emission sources and locate emission areas of important ozone and SOA precursors

Identification and characterization of Prunus persica miRNAs in response to UVB radiation in greenhouse through high-throughput sequencing

Abstract Background MicroRNAs (miRNAs) are small non-coding RNAs that regulate gene expression of target mRNAs involved in plant growth, development, and abiotic stress. As one of the most important model plants, peach (Prunus persica) has high agricultural significance and nutritional values. It is well adapted to be cultivated in greenhouse in which some auxiliary conditions like temperature, humidity, and UVB etc. are needed to ensure the fruit quality. However, little is known about the genomic information of P. persica under UVB supplement. Transcriptome and expression profiling data for this species are therefore important resources to better understand the biological mechanism of seed development, formation and plant adaptation to environmental change. Using a high-throughput miRNA sequencing, followed by qRT-PCR tests and physiological properties determination, we identified the responsive-miRNAs under low-dose UVB treatment and described the expression pattern and putative function of related miRNAs and target genes in chlorophyll and carbohydrate metabolism. Results A total of 164 known peach miRNAs belonging to 59 miRNA families and 109 putative novel miRNAs were identified. Some of these miRNAs were highly conserved in at least four other plant species. In total, 1794 and 1983 target genes for known and novel miRNAs were predicted, respectively. The differential expression profiles of miRNAs between the control and UVB-supplement group showed that UVB-responsive miRNAs were mainly involved in carbohydrate metabolism and signal transduction. UVB supplement stimulated peach to synthesize more chlorophyll and sugars, which was verified by qRT-PCR tests of related target genes and metabolites’ content measurement. Conclusion The high-throughput sequencing data provided the most comprehensive miRNAs resource available for peach study. Our results identified a series of differentially expressed miRNAs/target genes that were predicted to be low-dose UVB-responsive. The correlation between transcriptional profiles and metabolites contents in UVB supplement groups gave novel clues for the regulatory mechanism of miRNAs in Prunus. Low-dose UVB supplement could increase the chlorophyll and sugar (sorbitol) contents via miRNA-target genes and therefore improve the fruit quality in protected cultivation of peaches

Dietary antarctic krill improves antioxidant capacity, immunity and reduces lipid accumulation, insights from physiological and transcriptomic analysis of Plectropomus leopardus

Abstract Background Due to its enormous biomass, Antarctic krill (Euphausia superba) plays a crucial role in the Antarctic Ocean ecosystem. In recent years, Antarctic krill has found extensive application in aquaculture, emerging as a sustainable source of aquafeed with ideal nutritional profiles. However, a comprehensive study focused on the detailed effects of dietary Antarctic krill on aquaculture animals, especially farmed marine fishes, is yet to be demonstrated. Results In this study, a comparative experiment was performed using juvenile P. leopardus, fed with diets supplemented with Antarctic krill (the krill group) or without Antarctic krill (the control group). Histological observation revealed that dietary Antarctic krill could reduce lipid accumulation in the liver while the intestine exhibited no obvious changes. Enzyme activity measurements demonstrated that dietary Antarctic krill had an inhibitory effect on oxidative stress in both the intestine and the liver. By comparative transcriptome analysis, a total of 1,597 and 1,161 differentially expressed genes (DEGs) were identified in the intestine and liver, respectively. Functional analysis of the DEGs showed multiple enriched terms significantly related to cholesterol metabolism, antioxidants, and immunity. Furthermore, the expression profiles of representative DEGs, such as dhcr7, apoa4, sc5d, and scarf1, were validated by qRT-PCR and fluorescence in situ hybridization. Finally, a comparative transcriptome analysis was performed to demonstrate the biased effects of dietary Antarctic krill and astaxanthin on the liver of P. leopardus. Conclusions Our study demonstrated that dietary Antarctic krill could reduce lipid accumulation in the liver of P. leopardus, enhance antioxidant capacities in both the intestine and liver, and exhibit molecular-level improvements in lipid metabolism, immunity, and antioxidants. It will contribute to understanding the protective effects of Antarctic krill in P. leopardus and provide insights into aquaculture nutritional strategies

Comparative Study on the Role of Berberine and <i>Berberis lycium</i> Royle Roots Extract against the Biochemical Markers and Cyclin D1 Expression in HCC Animal Model

Diethylamine nitrosamine (DEN), as an initiator of liver tumor, and carbon tetrachloride (CCl4), as a tumor promoter, have been used to study the molecular events of liver cancer in animal models. Recently, our in vitro study reported BLE (Berberis lycium Royle ethanol extract) as the most effective agent against liver cancer, thus we continued our study in vivo to assess the hepatoprotective effect of BLE and its most active alkaloid, berberine, in albino mice (70 male). Moreover, we investigated the biochemical/immunohistochemical effects of a single alkaloid versus the effect of Berberis extract in mice liver. Hepatic cancer was induced in mice by a single intraperitoneal injection with DEN (100 mg/kg b.wt), followed by biweekly injections of CCl4 (0.5 mL/kg) for 30 days. The development of liver cancer was assessed after 60 days of DEN injection by measuring the elevated level of the serum tumor marker alpha-fetoprotein (AFP) and liver function test (ALT, AST, ALP, and BUN) markers. After the confirmation of liver cancer development, the BLE extract and berberine were fed to mice for 90 days and the serum biomarkers for liver injury (LFTs and AFP) were measured again. Overall, berberine (120 mg/kg b.wt) proved to be a stronger agent in reducing the symptoms of HCC in mice, as compared with BLE. Histopathological analysis agreed well with the biochemical observations. Immunohistochemistry analysis suggested significant suppression of the quantitative expression of the key oncogene cyclin D1 at low (60 mg/kg) and high (120 mg/kg) doses of berberine. These findings implicate the amelioration of hepatocarcinoma by berberine more prominently in mice, by suppression of cyclin-dependent kinase activator (CD1) expression, reducing LFTs, as well as AFP, in the serum. Thus, our findings are novel, as berberine may help in controlling the perturbation in CD1 associated with aggressive forms of HCC. However, future studies should be directed at finding out whether berberine has any effect on inhibitors (p27 and CDKI) of cyclin-dependent kinase too

In Vitro Anticancer Potential of Berberis lycium Royle Extracts against Human Hepatocarcinoma (HepG2) Cells

Human liver cancer has emerged as a serious health concern in the world, associated with poorly available therapies. The Berberis genus contains vital medicinal plants with miraculous healing properties and a wide range of bioactivities. In this study, different crude extracts of B. lycium Royle were prepared and screened against Human Hepatocarcinoma (HepG2) cell lines. The water/ethanolic extract of B. lycium Royle (BLE) exhibited significant antiproliferative activity against the HepG2 cancer cell line with an IC50 value of 47 μg/mL. The extract decreased the clonogenic potential of HepG2 cells in a dose-dependent manner. It induced apoptotic cell death in HepG2 cells that were confirmed by cytometric analysis and microscopic examination of cellular morphology through DAPI-stained cells. Biochemical evidence of apoptosis came from elevating the intracellular ROS level that was accompanied by the loss of mitochondrial membrane potential. The mechanism of apoptosis was further confirmed by gene expression analysis using RT-qPCR that revealed the decline in Bcl-2 independent of p53 mRNA and a rise in CDK1 while downregulating CDK5, CDK9, and CDK10 mRNA levels at 48 h of BLE treatment. The most active fraction was subjected to HPLC which indicated the presence of berberine (48 μg/mL) and benzoic acid (15.8 μg/mL) as major compounds in BLE and a trace amount of luteolin, rutin, and gallic acid. Our study highlighted the importance of the most active BLE extract as an excellent source of nutraceuticals against Human Hepatocarcinoma that can serve as an herbal natural cure against liver cancer

Additional file 3: Table S3. of Identification and characterization of Prunus persica miRNAs in response to UVB radiation in greenhouse through high-throughput sequencing

Details of targets genes and their annotation, GO classification, and KEGG pathway for the known miRNAs. (PDF 2499 kb

Intermediate‐Volatility Organic Compounds Observed in a Coastal Megacity:Importance of Non‐Road Source Emissions

Intermediate‐volatility organic compounds (IVOCs) are among the most important precursors to secondary organic aerosol (SOA), yet their sources and contributions to SOA in ambient air are poorly constrained. In this study, IVOCs were collected with sorption tubes in a coastal city in southern China during September–October 2019 and were analyzed by gas chromatography‐mass selective detector after thermo‐desorption. The measured average concentration of IVOCs was 25.0 ± 0.95 μg m−3 (mean ± 95% C.I.), and residual unresolved complex mixtures shared 79.8% ± 1.91% of IVOCs. The estimated SOA production, even only from speciated IVOCs and unspeciated branch‐alkane IVOCs, reached 2.44 ± 1.46 μg m−3, approximately five times that from VOCs during the photochemically active period (12:00–15:00 local time). Based on the positive matrix factorization model with a photochemical‐age‐based parameterization, diesel‐related emission was the largest contributor (46.6%) of IVOCs, followed by ship emission (23.0%), gasoline exhaust (16.8%), and biomass/coal burning (13.6%). Non‐road diesel engines accounted for a dominant part in diesel‐related emission. Ship emission was found to contribute SOA formation potentials (SOAFPs) comparable to that of diesel‐related emission, while biomass/coal burning showed higher SOAFPs than gasoline exhaust. Our results revealed that non‐road sources, such as ship emission, non‐road diesel engines, and biomass/coal burning contributed substantially to IVOCs, and will be of greater importance in producing ambient SOA with the increasingly stringent control on emissions from on‐road vehicles

Additional file 7: Figure S1. of Identification and characterization of Prunus persica miRNAs in response to UVB radiation in greenhouse through high-throughput sequencing

qRT-PCR analysis of five target genes predicted for miR3627-5p. Beta-actin was the internal control. Each experiment was performed with three biological replicates. (PDF 66 kb

Additional file 5: Table S5. of Identification and characterization of Prunus persica miRNAs in response to UVB radiation in greenhouse through high-throughput sequencing

Primers for qRT-PCR verification of miRNAs. (PDF 17 kb