Simultaneous profiling of transcriptome and DNA methylome from a single cell.

BackgroundSingle-cell transcriptome and single-cell methylome technologies have become powerful tools to study RNA and DNA methylation profiles of single cells at a genome-wide scale. A major challenge has been to understand the direct correlation of DNA methylation and gene expression within single-cells. Due to large cell-to-cell variability and the lack of direct measurements of transcriptome and methylome of the same cell, the association is still unclear.ResultsHere, we describe a novel method (scMT-seq) that simultaneously profiles both DNA methylome and transcriptome from the same cell. In sensory neurons, we consistently identify transcriptome and methylome heterogeneity among single cells but the majority of the expression variance is not explained by proximal promoter methylation, with the exception of genes that do not contain CpG islands. By contrast, gene body methylation is positively associated with gene expression for only those genes that contain a CpG island promoter. Furthermore, using single nucleotide polymorphism patterns from our hybrid mouse model, we also find positive correlation of allelic gene body methylation with allelic expression.ConclusionsOur method can be used to detect transcriptome, methylome, and single nucleotide polymorphism information within single cells to dissect the mechanisms of epigenetic gene regulation

Assessing the role of high-frequency winds and sea ice loss on arctic phytoplankton blooms in an ice-ocean-biogeochemical model

Identificadors digitals: Digital object identifier for the 'European Research Council' (http://dx.doi.org/10.13039/501100000781) and Digital object identifier for 'Horizon 2020' (http://dx.doi.org/10.13039/501100007601)Unidad de excelencia María de Maeztu MdM-2015-0552The long-term trend of increasing phytoplankton net primary production (NPP) in the Arctic correlates with increasing light penetration due to sea ice loss. However, recent studies suggest that enhanced stormy wind mixing may also play a significant role enhancing NPP. Here, we isolate the role of sea ice and stormy winds (hereafter high-frequency winds) using an eddy-permitting ice-ocean-biogeochemical model configured for the North Atlantic and the Arctic. In the model, the presence of high-frequency winds stimulates nutrient upwelling by producing an earlier and longer autumn-winter mixing period with deeper mixing layer. The early onset of autumn mixing results in nutrients being brought-up to near-surface waters before the light becomes the dominant limiting factor, which leads to the autumn bloom. The enhanced mixing results in higher nutrient concentrations in spring and thus a large spring bloom. The model also shows significant iron limitation in the Labrador Sea, which is intensified by high-frequency winds. The effect of sea ice loss on NPP was found to be regionally dependent on the presence of high-frequency winds. This numerical study suggests high-frequency winds play significant role increasing NPP in the Arctic and sub-Arctic by alleviating phytoplankton nutrient limitation and that the isolated effect of sea ice loss on light plays a comparatively minor role

Knowledge, attitudes and practice regarding environmental friendly disinfectants for household use among residents of China in the post-pandemic period

BackgroundA sharp rise in household consumption of disinfectants triggered by COVID-19 pandemic has generated tremendous environmental burden and risks of disinfectant emissions in the post-pandemic period. To address this emerging challenge, replacing highly hazardous disinfectants with more environmental friendly alternatives has been accepted as an inherently effective solution to environment issues posed by disinfectant emerging contaminants. However, no study has yet been done to explore the potential customers' attitudes and the market prospect of environmental friendly disinfectants until now.MethodsThis cross-sectional questionnaire-based survey was conducted from January to March, 2022, among resident volunteers in China, to explore the practices, knowledge and attitudes of the public regarding environmental friendly disinfectants for household use.ResultsAmong a total of 1,861 Chinese residents finally included in the analyses, 18% agreed or strongly agreed that they paid special attention to the environmental certification label on the product, and only bought the environmental certified disinfectant products; 16% and 10% were using environmental friendly disinfectants for hand sanitization and environmental disinfection, respectively. The mean self-assessed and actual knowledge scores were 2.42 ± 1.74 and 2.12 ± 1.97, respectively, out of a total of 5. Participants having good practices of consuming environmental friendly disinfectants achieved higher knowledge scores. Residents' overall attitudes toward the development, consumption and application of environmental friendly disinfectants were very positive. “Possible conflict between disinfection effectiveness and environmental factor of disinfectants in a context of severe COVID-19 pandemic” was considered as the most important barrier jeopardizing the participants' usage intention for environmental friendly disinfectants.ConclusionsThese data suggested most residents of China had a positive attitude, poor knowledge and practices toward environmental friendly disinfectants. More should be done to enhance the residents' environmental knowledge levels about disinfectants, and to further develop and promote disinfectant products with both excellent disinfection activity and environmentally friendly attributes

Capacity Prediction Model Based on Limited Priority Gap-Acceptance Theory at Multilane Roundabouts

Capacity is an important design parameter for roundabouts, and it is the premise of computing their delay and queue. Roundabout capacity has been studied for decades, and empirical regression model and gap-acceptance model are the two main methods to predict it. Based on gap-acceptance theory, by considering the effect of limited priority, especially the relationship between limited priority factor and critical gap, a modified model was built to predict the roundabout capacity. We then compare the results between Raff’s method and maximum likelihood estimation (MLE) method, and the MLE method was used to predict the critical gaps. Finally, the predicted capacities from different models were compared, with the observed capacity by field surveys, which verifies the performance of the proposed model

Greenland freshwater pathways in the sub-Arctic Seas from model experiments with passive tracers

Author Posting. © American Geophysical Union, 2016. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 121 (2016): 877–907, doi:10.1002/2015JC011290.Accelerating since the early 1990s, the Greenland Ice Sheet mass loss exerts a significant impact on thermohaline processes in the sub-Arctic seas. Surplus freshwater discharge from Greenland since the 1990s, comparable in volume to the amount of freshwater present during the Great Salinity Anomaly events, could spread and accumulate in the sub-Arctic seas, influencing convective processes there. However, hydrographic observations in the Labrador Sea and the Nordic Seas, where the Greenland freshening signal might be expected to propagate, do not show a persistent freshening in the upper ocean during last two decades. This raises the question of where the surplus Greenland freshwater has propagated. In order to investigate the fate, pathways, and propagation rate of Greenland meltwater in the sub-Arctic seas, several numerical experiments using a passive tracer to track the spreading of Greenland freshwater have been conducted as a part of the Forum for Arctic Ocean Modeling and Observational Synthesis effort. The models show that Greenland freshwater propagates and accumulates in the sub-Arctic seas, although the models disagree on the amount of tracer propagation into the convective regions. Results highlight the differences in simulated physical mechanisms at play in different models and underscore the continued importance of intercomparison studies. It is estimated that surplus Greenland freshwater flux should have caused a salinity decrease by 0.06–0.08 in the sub-Arctic seas in contradiction with the recently observed salinification (by 0.15–0.2) in the region. It is surmised that the increasing salinity of Atlantic Water has obscured the freshening signal.NSERC. Grant Numbers RGPIN 227438-09, RGPIN 04357 and RGPCC 433898; RFBR. Grant Number 13-05-00480, 14-05-00730, and 15-05-02457; NSF Grant Number: PLR-0804010, PLR-1313614, and PLR-12037202016-07-2

Function of TRP channels in monocytes/macrophages

The transient receptor potential channel (TRP channel) family is a kind of non- specific cation channel widely distributed in various tissues and organs of the human body, including the respiratory system, cardiovascular system, immune system, etc. It has been reported that various TRP channels are expressed in mammalian macrophages. TRP channels may be involved in various signaling pathways in the development of various systemic diseases through changes in intracellular concentrations of cations such as calcium and magnesium. These TRP channels may also intermingle with macrophage activation signals to jointly regulate the occurrence and development of diseases. Here, we summarize recent findings on the expression and function of TRP channels in macrophages and discuss their role as modulators of macrophage activation and function. As research on TRP channels in health and disease progresses, it is anticipated that positive or negative modulators of TRP channels for treating specific diseases may be promising therapeutic options for the prevention and/or treatment of disease

Capacity and Delay Estimation for Roundabouts Using Conflict Theory

To estimate the capacity of roundabouts more accurately, the priority rank of each stream is determined through the classification technique given in the Highway Capacity Manual 2010 (HCM2010), which is based on macroscopical analysis of the relationship between entry flow and circulating flow. Then a conflict matrix is established using the additive conflict flow method and by considering the impacts of traffic characteristics and limited priority with high volume. Correspondingly, the conflict relationships of streams are built using probability theory. Furthermore, the entry capacity model of roundabouts is built, and sensitivity analysis is conducted on the model parameters. Finally, the entrance delay model is derived using queuing theory, and the proposed capacity model is compared with the model proposed by Wu and that in the HCM2010. The results show that the capacity calculated by the proposed model is lower than the others for an A-type roundabout, while it is basically consistent with the estimated values from HCM2010 for a B-type roundabout

Pharmacy from the perspectives of other health professions: An intervention to foster professional identity among freshmen pharmacy students

Background: Professional identity is crucial for the development of pharmacy students’ professional confidence, learning motivation and future career choices. However, how to develop students’ professional identity in pharmacy education is an underdeveloped field of research. The critical component of professional identity has been considered formed as a result of stepwise socialization. Therefore, pharmacy professional identity might be influenced by associations with other health care professionals, such as physicians and nurses, who are involved in health care collaboration with pharmacists. Objectives: This work aimed to investigate the effect of a student-led interview intervention called “Pharmacy from the perspectives of other health professions” as an intervention on pharmacy freshmen’s perceptions and positivity toward the pharmacy profession. Methods: In this prospective pre/postintervention study, the effect of the interview intervention on students’ job preferences as well as attitudes toward the pharmacy profession and pharmacists’ role in health care was evaluated among 70 first-year pharmacy undergraduates equally divided into intervention and control groups using a self-developed questionnaire. Results: Compared with the controls, the numbers of respondents reporting no specific reasons for selecting the pharmacy profession and stating that they were unclear about their preferred post-graduation work sector were significantly reduced after the intervention. Participating in the intervention increased the number of students who agreed or strongly agreed that they would have a fulfilling and socially respectable career. Significantly more students in the intervention group agreed with the pharmacists’ role in health care as well as the current situation of pharmacy human resources than in the control group. Conclusion: This student-led interview intervention could be applied as an effective tool for improving students’ professional identity and positivity in pharmacy education