Hydrodynamic Impacts of a Marine Renewable Energy Installation on the Benthic Boundary Layer in a Tidal Channel

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Predictable hydrodynamic conditions explain temporal variations in the density of benthic foraging seabirds in a tidal stream environment

VC International Council for the Exploration of the Sea 2016. James J. Waggitt was funded by a NERC Case studentship supported by OpenHydro Ltd and Marine Scotland Science (NE/J500148/1). Shore-based surveys were funded by a NERC (NE/J004340/1) and a Scottish National Heritage (SNH) grant. FVCOM was funded by a NERC grant (NE/J004316/1). The bathymetry data used in hydrodynamic models (HI 1122 Sanday Sound to Westray Firth) was collected by the Maritime and Coastguard Agency (MCA) as part of the UK Civil Hydrography Programme. We wish to thank Christina Bristow, Matthew Finn and Jennifer Norris at the European Marine Energy Centre (EMEC); Ian Davies at Marine Scotland Science; Gail Davoren, Shaun Fraser, Pauline Goulet, Alex Robbins and Helen Wade for invaluable discussions; Thomas Cornulier, Alex Douglas, James Grecian and Samantha Patrick for their help with statistical analysis; and Jenny Campbell and the Cockram family for assistance during fieldwork.Peer reviewedPublisher PD

Application of a multibeam echosounder to document changes in animal movement and behaviour around a tidal turbine structure

Acknowledgements We acknowledge the support of Shaun Fraser, Vladimir Nikora, James Waggitt, Paul Bell, Ian Davies, Eric Armstrong, and staff at Marine Scotland Science and the European Marine Energy Centre. Hydrodynamic model data were provided by Pierre Cazenave and Ricardo Torres (Plymouth Marine Laboratory). The constructive and extensive comments from three reviewers of an earlier version of this manuscript are gratefully acknowledged. Funding This work was funded by NERC and Defra (NE/J004308/1, NE/J004200/1, NE/J004332/1, NE/N01765X/1), a NERC MREKEP Internship, Innovate UK KTP (KTP009812), and the UK Department for Business, Energy and Industrial Strategy’s offshore energy Strategic Environmental Assessment programme.Peer reviewedPublisher PD

Composition and Diversity of Woody Plants in Tree Plantations Versus Secondary Forests in Costa Rican Lowlands

Efforts to sequester carbon through tree plantations and natural regeneration in the tropics may also provide an opportunity to restore native forest ecosystems. However, the degree to which species composition of native species differs between tree plantations and secondary forests is unknown. In this study, we conducted surveys of woody plants (≥2 cm dbh) in 20 secondary forest and tree plantation plots (30 × 30 m) in a tropical lowland forest landscape. Sites were 8 to 21 years old and were either abandoned cattle pastures (secondary forests) or monoculture tree plantations (Hieronyma alchorneoides and Vochysia guatemalensis) planted for carbon sequestration. We compared species composition, ecological traits, and diversity of woody plants in secondary forests and tree plantations, while accounting for distance from primary forest. Species composition, but not species richness, of the natural regeneration was significantly different in tree plantations and secondary forests. The abundances of understory species, short-lived pioneers, and bat-dispersed species were all higher in secondary forests than in tree plantations. Abundances of canopy species, long-lived pioneers, shade-tolerant species, and dispersal categories besides bats were not associated with forest type. We conclude that tree plantations can alter species composition of regeneration compared with secondary forests perhaps by altering composition of seed disperser assemblages or inhibiting early successional species. © The Author(s) 2018

Quantifying pursuit-diving seabirds’ associations with fine-scale physical features in tidal stream environments

Acknowledgements: James J. Waggitt was funded by a NERC Case studentship supported by OpenHydro Ltd and Marine Scotland Science (NE/J500148/1). Vessel-based transects were funded by a NERC (NE/J004340/1) and a Scottish National Heritage (SNH) grant. FVCOM modelling was funded by a NERC grant (NE/J004316/1). Marine Scotland Science provided time on the FRV Alba-na-Mara as part as the Marine Collaboration Research Forum (MarCRF). The bathymetry data used in hydrodynamic models (HI 1122 Sanday Sound to Westray Firth) was collected by the Maritime & Coastguard Agency (MCA) as part of the UK Civil Hydrography Programme. We wish to thank Christina Bristow, Matthew Finn and Jennifer Norris at the European Marine Energy Centre (EMEC); Marianna Chimienti, Ciaran Cronin, Tim Sykes and Stuart Thomas for performing vessel-based transects; Marine Scotland Science staff Eric Armstrong, Ian Davies, Mike Robertson, Robert Watret and Michael Stewart for their assistance; Shaun Fraser, Pauline Goulet, Alex Robbins, Helen Wade and Jared Wilson for invaluable discussions; Thomas Cornulier, Alex Douglas, James Grecian and Samantha Patrick for their help with statistical analysis; and Gavin Siriwardena, Leigh Torres, Mark Whittingham and Russell Wynn for their constructive comments on earlier versions of this manuscript. APC paid through institutional prepayment schemePeer reviewedPublisher PD

Multisensor acoustic tracking of fish and seabird behavior around tidal turbine structures in Scotland

Despite rapid development of marine renewable energy, relatively little is known of the immediate and future impacts on the surrounding ecosystems. Quantifying the behavior and distribution of animals around marine renewable energy devices is crucial for understanding, predicting, and potentially mitigating any threats posed by these installations. The Flow and Benthic Ecology 4D (FLOWBEC) autonomous seabed platform integrated an Imagenex multibeam echosounder and a Simrad EK60 multi-frequency echosounder to monitor marine life in a 120◦ sector over ranges up to 50 m, seven to eight times per second. Established target detection algorithms fail within MRE sites, due to high levels of backscatter generated by the turbulent physical dynamics, limiting and biasing analysis to only periods of low current speed. This study presents novel algorithms to extract diving seabirds, fish, and fish schools from the intense backscatter caused by turbulent dynamics in flows of 4ms−1. Filtering, detection, and tracking using a modified nearest neighbor algorithm provide robust tracking of animal behavior using the multibeam echosounder. Independent multifrequency target detection is demonstrated using the EK60 with optimally calculated thresholds, scale-sensitive filters, morphological exclusion, and frequency-response characteristics. This provides sensitive and reliable detection throughout the entire water column and at all flow speeds. Dive profiles, depth preferences, predator–prey interactions, and fish schooling behavior can be analyzed, in conjunction with the hydrodynamic impacts of marine renewable energy devices. Coregistration of targets between the acoustic instruments increases the information available, providing quantitative measures including frequency response from the EK60, and target morphology and behavioral interactions from the multibeam echosounder. The analyses draw on deployments at a tidal energy site in Scotland to compare the presence and absence of renewable energy structures across a range of physical and trophic levels over complete spring-neap tidal cycles. These results can be used to inform how animals forage in these sites and whether individuals face collision risks. This quantitative information can de-risk the licensing process and, with a greater mechanistic understanding at demonstration scales, its predictive power could reduce the monitoring required at future arrays

A Self-Contained Subsea Platform for Acoustic Monitoring of the Environment Around Marine Renewable Energy Devices-Field Deployments at Wave and Tidal Energy Sites in Orkney, Scotland

The drive towards sustainable energy has seen rapid development of marine renewable energy devices (MREDs). The NERC/Defra collaboration FLOw, Water column and Benthic ECology 4-D (FLOWBEC-4D) is investigating the environmental and ecological effects of installing and operating wave and tidal energy devices. The FLOWBEC sonar platform combines several instruments to record information at a range of physical and multitrophic levels for durations of two weeks to capture an entire spring-neap tidal cycle. An upward-facing multifrequency Simrad EK60 echosounder is synchronized with an upward-facing Imagenex Delta T multibeam sonar. An acoustic Doppler velocimeter (ADV) provides local current measurements and a fluorometer measures chlorophyll (as a proxy for phytoplankton) and turbidity. The platform is self-contained, facilitating rapid deployment and recovery in high-energy sites and flexibility in gathering baseline data. Five 2-week deployments were completed in 2012 and 2013 at wave and tidal energy sites, both in the presence and absence of renewable energy structures at the European Marine Energy Centre (EMEC), Orkney, U.K. Algorithms for target tracking have been designed and compared with concurrent, shore-based seabird observations used to ground truth the acoustic data. The depth preference and interactions of birds, fish schools and marine mammals with MREDs can be tracked to assess whether individual animals face collision risks with tidal stream turbines, and how animals generally interact with MREDs. These results can be used to guide marine spatial planning, device design, licensing and operation, as different device types are tested, as individual devices are scaled up to arrays, and as new sites are considered

Using Unmanned Aerial Vehicle (UAV) Imagery to Characterise Pursuit-Diving Seabird Association With Tidal Stream Hydrodynamic Habitat Features

Acknowledgments We gratefully acknowledge the support of colleagues at Marine Scotland Science, the crew and scientists of the MRV Scotia 2018 cruise (particularly Chief Scientist Adrian Tait) and ERI interns: Gael Gelis and Martin Forestier. We gratefully acknowledge the constructive comments from reviewers. Finally, we also want to thank Ella Benninghaus for providing the auk illustrations used within the paper. Funding This work was funded by the Bryden Centre project, supported by the European Union’s INTERREG VA Programme, and managed by the Special EU Programmes Body (SEUPB). The views and opinions expressed in this paper do not necessarily reflect those of the European Commission or the Special EU Programmes Body (SEUPB). Aspects of this research were also funded by a Royal Society Research Grant [RSG\R1\180430], the NERC VertIBase project [NE/N01765X/1], the UK Department for Business, Energy, and Industrial Strategy’s offshore energy Strategic Environmental Assessment programme and EPSRC Supergen ORE Hub [EP/S000747/1].Peer reviewedPublisher PD